Glycerol Dehydratases: Biochemical Structures, Catalytic Mechanisms, and Industrial Applications in 1,3-Propanediol Production by Naturally Occurring and Genetically Engineered Bacterial Strains
- PMID: 27033090
- DOI: 10.1007/s12010-016-2051-6
Glycerol Dehydratases: Biochemical Structures, Catalytic Mechanisms, and Industrial Applications in 1,3-Propanediol Production by Naturally Occurring and Genetically Engineered Bacterial Strains
Abstract
To date, two types of glycerol dehydratases have been reported: coenzyme B12-dependent and coenzyme B12-independent glycerol dehydratases. The three-dimensional structure of the former is a dimer of αβγ heterotrimer, while that of the latter is a homodimer. Their mechanisms of reaction are typically enzymatic radical catalysis. Functional radical in both the glycerol dehydratases is the adenosyl radical. However, the adenosyl radical in the former originates from coenzyme B12 by homolytic cleavage, and that in the latter from S-adenosyl-methionine. Until some years ago, Clostridium butyricum VPI 1718 was the only microorganism known to possess B12-independent glycerol dehydratase, but since then, several other bacteria with this unique capability have been identified. This article focuses on the glycerol dehydratases and on 1,3-propanediol production from glycerol by naturally occurring and genetically engineered bacterial strains containing glycerol dehydratase.
Keywords: 1,3-Propanediol (PD); Biochemical structure; Bioprocessing; Catalytic mechanism; Crude glycerol; Glycerol; Glycerol dehydratase (GDH).
Similar articles
-
Identification and characterization of coenzyme B12-dependent glycerol dehydratase- and diol dehydratase-encoding genes from metagenomic DNA libraries derived from enrichment cultures.Appl Environ Microbiol. 2003 Jun;69(6):3048-60. doi: 10.1128/AEM.69.6.3048-3060.2003. Appl Environ Microbiol. 2003. PMID: 12788698 Free PMC article.
-
Biochemistry of coenzyme B12-dependent glycerol and diol dehydratases and organization of the encoding genes.FEMS Microbiol Rev. 1998 Dec;22(5):553-66. doi: 10.1111/j.1574-6976.1998.tb00387.x. FEMS Microbiol Rev. 1998. PMID: 9990728 Review.
-
Identification and expression of the genes and purification and characterization of the gene products involved in reactivation of coenzyme B12-dependent glycerol dehydratase of Citrobacter freundii.Eur J Biochem. 2001 Apr;268(8):2369-78. doi: 10.1046/j.1432-1327.2001.02123.x. Eur J Biochem. 2001. PMID: 11298756
-
Distribution of coenzyme B12-dependent diol dehydratase and glycerol dehydratase in selected genera of Enterobacteriaceae and Propionibacteriaceae.J Bacteriol. 1980 Mar;141(3):1439-42. doi: 10.1128/jb.141.3.1439-1442.1980. J Bacteriol. 1980. PMID: 6988416 Free PMC article.
-
Radical catalysis of B12 enzymes: structure, mechanism, inactivation, and reactivation of diol and glycerol dehydratases.Cell Mol Life Sci. 2000 Jan 20;57(1):106-27. doi: 10.1007/s000180050502. Cell Mol Life Sci. 2000. PMID: 10949584 Free PMC article. Review.
Cited by
-
Rescuing activity of oxygen-damaged pyruvate formate-lyase by a spare part protein.J Biol Chem. 2021 Dec;297(6):101423. doi: 10.1016/j.jbc.2021.101423. Epub 2021 Nov 18. J Biol Chem. 2021. PMID: 34801558 Free PMC article.
-
Obligately Tungsten-Dependent Enzymes─Catalytic Mechanisms, Models and Applications.Biochemistry. 2025 May 20;64(10):2154-2172. doi: 10.1021/acs.biochem.5c00116. Epub 2025 May 5. Biochemistry. 2025. PMID: 40323690 Free PMC article. Review.
-
Structural and functional insights into asymmetric enzymatic dehydration of alkenols.Nat Chem Biol. 2017 Mar;13(3):275-281. doi: 10.1038/nchembio.2271. Epub 2017 Jan 9. Nat Chem Biol. 2017. PMID: 28068311
-
Recent Progress in the Understanding and Engineering of Coenzyme B12-Dependent Glycerol Dehydratase.Front Bioeng Biotechnol. 2020 Nov 5;8:500867. doi: 10.3389/fbioe.2020.500867. eCollection 2020. Front Bioeng Biotechnol. 2020. PMID: 33224925 Free PMC article. Review.
-
H-NS involved in positive regulation of glycerol dehydratase gene expression in Klebsiella pneumoniae 2e.Appl Environ Microbiol. 2024 Aug 21;90(8):e0007524. doi: 10.1128/aem.00075-24. Epub 2024 Jul 12. Appl Environ Microbiol. 2024. PMID: 38995045 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources