Rare variants, autoimmune disease, and arthritis
- PMID: 27224741
- PMCID: PMC4910637
- DOI: 10.1097/BOR.0000000000000298
Rare variants, autoimmune disease, and arthritis
Abstract
Purpose of review: We review select studies of newly discovered rare variants in autoimmune diseases with a focus on newly described monogenic disorders, rheumatoid arthritis, and systemic lupus erythematosus.
Recent findings: Two new monogenic syndromes of inflammatory arthritis were discovered using whole exome sequencing: the coatomer subunit alpha syndrome because of rare mutations in coatomer subunit alpha and haploinsufficiency of A20 resulting from rare mutations in TNFAIP3. Targeted exon sequencing identified rare variants in IL2RA and IL2RB associated with rheumatoid arthritis. Rare variants in TREX1 and other genes associated with monogenic interferonopathies are also associated with systemic lupus erythematosus.
Summary: Rare genetic variants contribute to the heritability of autoimmunity and provide key insight into both novel and previously implicated immunological pathways that are disrupted in autoimmune diseases.
Conflict of interest statement
References
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- Farh KK-H, Marson A, Zhu J, Kleinewietfeld M, Housley WJ, Beik S, et al. Genetic and epigenetic fine mapping of causal autoimmune disease variants. Nature. 2015 Feb 19;518(7539):337–43. Using Probabilistic identification of causal SNPs (PICS) the authors perform dense genotyping to assign explicit probabilities of causality to autoimmune disease SNPs within GWAS loci. They determine that 90% of variants are non-coding and tend to occur near important immunoregulatory regions. - PMC - PubMed
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- Wang S, Wiley GB, Kelly JA, Gaffney PM. Disease mechanisms in rheumatology–tools and pathways: defining functional genetic variants in autoimmune diseases. 2015 Jan;67(1):1–10. Outlines the strengths and limitations of GWAS in the study of autoimmune disease and reviews tools and approaches for the functional testing of variants to evaluate their significance in disease. - PMC - PubMed
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