A Gene Ontology Tutorial in Python

Alex Warwick Vesztrocy^{1

2}, Christophe Dessimoz^{3

4

5

6

7}

Affiliations

¹ Department of Genetics, Evolution and Environment, University College London, Gower St, London, WC1E 6BT, UK.
² Swiss Institute of Bioinformatics, Biophore Building, 1015, Lausanne, Switzerland.
³ Department of Genetics, Evolution and Environment, University College London, Gower St, London, WC1E 6BT, UK. Christophe.Dessimoz@unil.ch.
⁴ Swiss Institute of Bioinformatics, Biophore Building, 1015, Lausanne, Switzerland. Christophe.Dessimoz@unil.ch.
⁵ Department of Ecology and Evolution, University of Lausanne, Biophore, 1015, Lausanne, Switzerland. Christophe.Dessimoz@unil.ch.
⁶ Center of Integrative Genomics, University of Lausanne, Biophore, 1015, Lausanne, Switzerland. Christophe.Dessimoz@unil.ch.
⁷ Department of Computer Science, University College London, Gower St, London, WC1E 6BT, UK. Christophe.Dessimoz@unil.ch.

PMID: 27812946
DOI: 10.1007/978-1-4939-3743-1_16

A Gene Ontology Tutorial in Python

Alex Warwick Vesztrocy et al. Methods Mol Biol. 2017.

. 2017:1446:221-229.

doi: 10.1007/978-1-4939-3743-1_16.

Authors

Alex Warwick Vesztrocy^{1

2}, Christophe Dessimoz^{3

4

5

6

7}

Affiliations

¹ Department of Genetics, Evolution and Environment, University College London, Gower St, London, WC1E 6BT, UK.
² Swiss Institute of Bioinformatics, Biophore Building, 1015, Lausanne, Switzerland.
³ Department of Genetics, Evolution and Environment, University College London, Gower St, London, WC1E 6BT, UK. Christophe.Dessimoz@unil.ch.
⁴ Swiss Institute of Bioinformatics, Biophore Building, 1015, Lausanne, Switzerland. Christophe.Dessimoz@unil.ch.
⁵ Department of Ecology and Evolution, University of Lausanne, Biophore, 1015, Lausanne, Switzerland. Christophe.Dessimoz@unil.ch.
⁶ Center of Integrative Genomics, University of Lausanne, Biophore, 1015, Lausanne, Switzerland. Christophe.Dessimoz@unil.ch.
⁷ Department of Computer Science, University College London, Gower St, London, WC1E 6BT, UK. Christophe.Dessimoz@unil.ch.

PMID: 27812946
DOI: 10.1007/978-1-4939-3743-1_16

Abstract

This chapter is a tutorial on using Gene Ontology resources in the Python programming language. This entails querying the Gene Ontology graph, retrieving Gene Ontology annotations, performing gene enrichment analyses, and computing basic semantic similarity between GO terms. An interactive version of the tutorial, including solutions, is available at http://gohandbook.org .

Keywords: Gene Ontology; Python; Tutorial.

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A Gene Ontology Tutorial in Python

Affiliations

A Gene Ontology Tutorial in Python

Authors

Affiliations

Abstract

Publication types

MeSH terms

Grants and funding

LinkOut - more resources

Full Text Sources

Other Literature Sources