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. 2016 Oct 27:7:1720.
doi: 10.3389/fmicb.2016.01720. eCollection 2016.

Genomic Comparison of Agrobacterium pusense Strains Isolated from Bean Nodules

Alejandro Aguilar  1 , Humberto Peralta  1 , Yolanda Mora  1 , Rafael Díaz  1 , Carmen Vargas-Lagunas  1 , Lourdes Girard  1 , Jaime Mora  1
Affiliations

Genomic Comparison of Agrobacterium pusense Strains Isolated from Bean Nodules

Alejandro Aguilar et al. Front Microbiol. .
No abstract available

Keywords: Agrobacterium; Phaseolus vulgaris; nodulation; symbiosis.

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Figures

Figure 1
Figure 1
Genome comparison of Agrobacterium pusense strains. (A) Eckhardt plasmid profile of strains CCGM10, CCGM11, and R. etli CFN42 (for which the pattern was known). Estimated molecular weights are in kb. (B) Schematic representation of the chromosomes of A. pusense strains. The chromosomes of A. pusense IRBG74 were used as a reference. Top, comparison of circular chromosome. From the innermost circle: GC skew, %GC content, CDS prediction with direction of transcription of the IRBG74 chromosome (gray boxes), comparison with CCGM10 (red bars), comparison with CCGM11 (orange), comparison with HPC(L) (turquoise), and comparison with A. fabrum C58 (green). Bottom, comparison of linear chromosome. From bottom, CDS prediction with direction of transcription of the IRBG74 chromosome (gray boxes), comparison with CCGM10 (red bars), comparison with CCGM11 (orange), comparison with HPC(L) (turquoise), and comparison with A. fabrum C58 (green). (C) Homology of plasmid genes of strain CCGM10.
See this image and copyright information in PMC

References

    1. Agarwal L., Purohit H. J. (2013). Genome sequence of Rhizobium lupini HPC(L) isolated from saline desert soil, Kutch (Gujarat). Genome Announc. 1, e00071–12. 10.1128/genomeA.00071-12 - DOI - PMC - PubMed
    1. Arndt D., Grant J. R., Marcu A., Sajed T., Pon A., Liang Y., et al. (2016). PHASTER: a better, faster version of the PHAST phage search tool. Nucleic Acids Res. 44, W16–W21. 10.1093/nar/gkw387 - DOI - PMC - PubMed
    1. Aserse A. A., Räsänen L. A., Assefa F., Hailemariam A., Lindström K. (2012). Phylogeny and diversity of native rhizobia nodulating common bean (Phaseolus vulgaris L.) in Ethiopia. Syst. Appl. Microbiol. 35, 120–131. 10.1016/j.syapm.2011.11.005 - DOI - PubMed
    1. Aujoulat F., Marchandin H., Zorgniotti I., Masnou A., Jumas-Bilak E. (2015). Rhizobium pusense is the main human pathogen in the genus Agrobacterium/Rhizobium. Clin. Microbiol. Infect. 21, 472e471–475. 10.1016/j.cmi.2014.12.005 - DOI - PubMed
    1. Aziz R. K., Bartels D., Best A. A., DeJongh M., Disz T., Edwards R. A., et al. (2008). The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75. 10.1186/1471-2164-9-75 - DOI - PMC - PubMed

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