This site needs JavaScript to work properly. Please enable it to take advantage of the complete set of features!

Skip to main page content

Add to Collections

Your saved search

Name of saved search:

Search terms:

Test search terms

Would you like email updates of new search results?

Yes
No

Email: (change)

Frequency:

Which day?

Which day?

Report format:

Send at most:

Send even when there aren't any new results

Optional text in email:

Your RSS Feed

Published Erratum

. 2016 Nov 22;8(1):123.

doi: 10.1186/s13073-016-0377-x.

Erratum to: Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens

Thuy Doan^{1

2}, Michael R Wilson^{3

4}, Emily D Crawford^{3

5}, Eric D Chow³, Lillian M Khan³, Kristeene A Knopp³, Brian D O'Donovan³, Dongxiang Xia⁶, Jill K Hacker⁶, Jay M Stewart², John A Gonzales^{1

2}, Nisha R Acharya^{1

2}, Joseph L DeRisi⁷

Affiliations

Affiliations

¹ Francis I. Proctor Foundation, University of California San Francisco, San Francisco, CA, USA.
² Department of Ophthalmology, University of California San Francisco, San Francisco, CA, USA.
³ Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA.
⁴ Department of Neurology, University of California San Francisco, San Francisco, CA, USA.
⁵ Howard Hughes Medical Institute, Chevy Chase, MD, USA.
⁶ California Department of Public Health, Richmond, CA, USA.
⁷ Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA. joe@derisilab.ucsf.edu.

PMID: 27876088
PMCID: PMC5118887
DOI: 10.1186/s13073-016-0377-x

Published Erratum

Erratum to: Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens

Thuy Doan et al. Genome Med. 2016.

. 2016 Nov 22;8(1):123.

doi: 10.1186/s13073-016-0377-x.

Authors

Thuy Doan^{1

2}, Michael R Wilson^{3

4}, Emily D Crawford^{3

5}, Eric D Chow³, Lillian M Khan³, Kristeene A Knopp³, Brian D O'Donovan³, Dongxiang Xia⁶, Jill K Hacker⁶, Jay M Stewart², John A Gonzales^{1

2}, Nisha R Acharya^{1

2}, Joseph L DeRisi⁷

Affiliations

¹ Francis I. Proctor Foundation, University of California San Francisco, San Francisco, CA, USA.
² Department of Ophthalmology, University of California San Francisco, San Francisco, CA, USA.
³ Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA.
⁴ Department of Neurology, University of California San Francisco, San Francisco, CA, USA.
⁵ Howard Hughes Medical Institute, Chevy Chase, MD, USA.
⁶ California Department of Public Health, Richmond, CA, USA.
⁷ Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA. joe@derisilab.ucsf.edu.

PMID: 27876088
PMCID: PMC5118887
DOI: 10.1186/s13073-016-0377-x

No abstract available

PubMed Disclaimer

Figures

Fig. 3 — Fig. 3
Identification of rubella virus (RV) by metagenomic deep sequencing (MDS). a Illustrates how the 9688 nucleotide paired-end sequence reads obtained from sequencing the RNA extracted from subject 6’s aqueous fluid aligned to the most closely matched RV genome (GenBank DQ388280.1): 99.3% of the total RV genome is represented. Positions of synonymous (black vertical lines) and non-synonymous (red vertical lines) variants are shown. Of the 149 substitutions, 107 were synonymous and 42 were non-synonymous. Of the 42 non-synonymous mutations, 25 occurred within the coding region for the E1 and E2 glycoproteins. Per unit length, the number of non-synonymous mutations in the E1 and E2 proteins was 6.3-fold higher than in the non-structural proteins. The cyan marker above the E1 gene represents the 739-nucleotide sequence window recommended by the World Health Organization (WHO) for RV genotyping. b Phylogenetic analysis of subject 6’s RV strain obtained from MDS with 32 WHO reference strains, GUZ_GER92 (Stuttgart strain), and the RV27/3 vaccine strain, demonstrating that the subject’s RV sequence was most closely related to the genotype 1G viruses and not the vaccine strain

See this image and copyright information in PMC

Erratum for

Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens.
Doan T, Wilson MR, Crawford ED, Chow ED, Khan LM, Knopp KA, O'Donovan BD, Xia D, Hacker JK, Stewart JM, Gonzales JA, Acharya NR, DeRisi JL. Doan T, et al. Genome Med. 2016 Aug 25;8(1):90. doi: 10.1186/s13073-016-0344-6. Genome Med. 2016. PMID: 27562436 Free PMC article.

References

1. Doan T, Wilson MR, Crawford ED, Chow ED, Khan LM, Knopp KA, O’Donovan BD, Xia D, Hacker JK, Stewart JM, Gonzales JA, Archarya NR, DeRisi JL. Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens. Genome Med. 2016;8:106. doi: 10.1186/s13073-016-0360-6. - DOI - PMC - PubMed

Publication types

Actions

Grants and funding

LinkOut - more resources

Full Text Sources
Other Literature Sources
- scite Smart Citations