Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
Meta-Analysis
. 2017 Jan 3;8(1):1944-1952.
doi: 10.18632/oncotarget.13719.

Decreased 5-hydroxymethylcytosine levels correlate with cancer progression and poor survival: a systematic review and meta-analysis

Affiliations
Meta-Analysis

Decreased 5-hydroxymethylcytosine levels correlate with cancer progression and poor survival: a systematic review and meta-analysis

Zhaoli Chen et al. Oncotarget. .

Abstract

Ten-eleven translocation (TET) enzymes catalyze the oxidation of 5-methylcytosine (5-mC) to 5-hydroxymethylcytosine (5-hmC) and then to 5-formylcytosine (5-fC) and 5-carboxylcytosine (5-caC), resulting in genomic DNA demethylation. Decreased 5-hmC levels have been reported in a variety of cancers, and loss of 5-hmC might be considered an epigenetic hallmark of cancer. However, the prognostic value of decreased 5-hmC in cancers remain controversial. Here, a systematic review was performed by conducting an electronic search of PubMed, EMBASE, Web of Science and the Cochrane Library. Finally, ten studies with a total of 1736 patients with cancer were included in the present study. Negative/low 5-hmC levels were significantly associated with lymph node metastasis [OR=2.20, 95% CI=1.23-3.96, P=0.008] and advanced TNM stage [OR=2.89, 95% CI=1.21-6.92, P=0.017]. More importantly, negative/low 5-hmC levels were significantly associated with poor prognosis of cancer patients [overall survival: HR=1.76, 95% CI=1.41-2.11, P < 0.001; disease free survival: HR=1.28, 95% CI=0.60-1.96, P < 0.001]. The results of this meta-analysis indicate that decreased 5-hmC levels are an indicator of poor survival of cancer patients. Given variability related to ethnicity, cancer types and detection methods, additional well-designed studies with larger sample sizes are required to further confirm our findings.

Keywords: 5-hydroxymethylcytosine; cancer staging; disease-free survival; meta-analysis; overall survival.

PubMed Disclaimer

Conflict of interest statement

CONFLICTS OF INTEREST

No potential conflicts of interest are disclosed.

Figures

Figure 1
Figure 1. Flow diagram of the selection process
Figure 2
Figure 2. Correlation of 5-hmC levels and cancer stages
A. Forest plots of the association between negative/low 5-hmC levels and lymph node metastasis (positive vs negative). B. Forest plots of the association between negative/low 5-hmC levels and TNM stage (III/IV stage vs I/II stage). C. Forest plots of the association between negative/low 5-hmC levels and histological differentiation grade (poor vs well/moderate). The squares and horizontal lines correspond to the study-specific OR and 95% CI, respectively. The area of the squares reflects the weight (inverse of the variance). The diamond represents the summary OR and 95% CI.
Figure 3
Figure 3. Prognostic value of negative/low 5-hmC levels in patients with cancer
A. Meta-analysis of the association between negative/low 5-hmC levels and overall survival in various cancers. B. Meta-analysis of the association between negative/low 5-hmC levels and disease-free survival in various cancers.
Figure 4
Figure 4. Stratified analyses of the association between 5-hmC levels and lymph node metastasis A., TNM stage B., and histological differentiation grade C. were performed by detection methods
Figure 5
Figure 5. The Begg's funnel plots and Egger's publication bias plots assessing the publication bias in analyses of the association of 5-hmC levels with lymph node metastasis A., TNM stage B., overall survival C., and disease-free survival D

References

    1. Baylin SB, Jones PA. A decade of exploring the cancer epigenome - biological and translational implications. Nat Rev Cancer. 2011;11:726–734. - PMC - PubMed
    1. Tahiliani M, Koh KP, Shen YH, Pastor WA, Bandukwala H, Brudno Y, Agarwal S, Iyer LM, Liu DR, Aravind L, Rao A. Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science. 2009;324:930–935. - PMC - PubMed
    1. Ito S, Shen L, Dai Q, Wu SC, Collins LB, Swenberg JA, He C, Zhang Y. Tet Proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science. 2011;333:1300–1303. - PMC - PubMed
    1. He YF, Li BZ, Li Z, Liu P, Wang Y, Tang QY, Ding JP, Jia YY, Chen ZC, Li L, Sun Y, Li XX, Dai Q, et al. Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science. 2011;333:1303–1307. - PMC - PubMed
    1. Jin SG, Kadam S, Pfeifer GP. Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine. Nucleic Acids Res. 2010;38:e125. - PMC - PubMed

LinkOut - more resources