myGenomeBrowser: building and sharing your own genome browser
- PMID: 28011789
- PMCID: PMC5408841
- DOI: 10.1093/bioinformatics/btw800
myGenomeBrowser: building and sharing your own genome browser
Abstract
myGenomeBrowser is a web-based environment that provides biologists with a way to build, query and share their genome browsers. This tool, that builds on JBrowse, is designed to give users more autonomy while simplifying and minimizing intervention from system administrators. We have extended genome browser basic features to allow users to query, analyze and share their data.
Availability and implementation: myGenomeBrowser is freely available at https://bbric-pipelines.toulouse.inra.fr/myGenomeBrowser and includes tutorial screencasts. Source code and installation instructions can be found at https://framagit.org/BBRIC/myGenomeBrowser . myGenomeBrowser is open-source and mainly implemented in Perl, JavaScript, Apache and Docker.
Contact: sebastien.carrere@inra.fr.
© The Author 2017. Published by Oxford University Press.
References
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- Donlin M.J. (2009) Using the generic genome browser (GBrowse). Curr. Protoc. Bioinforma. - PubMed
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