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. 2017 Feb 1;33(3):461-463.
doi: 10.1093/bioinformatics/btw626.

A Cytoscape app for motif enumeration with ISMAGS

Thomas Van Parys  1   2   3 , Ine Melckenbeeck  4 , Maarten Houbraken  4 , Pieter Audenaert  3   4 , Didier Colle  3   4 , Mario Pickavet  3   4 , Piet Demeester  3   4 , Yves Van de Peer  1   2   3   5
Affiliations

A Cytoscape app for motif enumeration with ISMAGS

Thomas Van Parys et al. Bioinformatics. .

Abstract

Summary: We present a Cytoscape app for the ISMAGS algorithm, which can enumerate all instances of a motif in a graph, making optimal use of the motif’s symmetries to make the search more efficient. The Cytoscape app provides a handy interface for this algorithm, which allows more efficient network analysis.

Availability and implementation: The Cytoscape app for ISMAGS can be freely downloaded from the Cytoscape App store http://apps.cytoscape.org/apps/ismags. Source code and documentation for ISMAGS are available at https://github.com/biointec/ismags. Source code and documentation for the Cytoscape app are available at https://gitlab.psb.ugent.be/thpar/ISMAGS_Cytoscape.

Contacts: Pieter.Audenaert@intec.ugent.be or Yves.VanDePeer@psb.vib-ugent.be

Supplementary information: Supplementary data are available at Bioinformatics online.

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