LDAP: a web server for lncRNA-disease association prediction
- PMID: 28172495
- DOI: 10.1093/bioinformatics/btw639
LDAP: a web server for lncRNA-disease association prediction
Abstract
Motivation: Increasing evidences have demonstrated that long noncoding RNAs (lncRNAs) play important roles in many human diseases. Therefore, predicting novel lncRNA-disease associations would contribute to dissect the complex mechanisms of disease pathogenesis. Some computational methods have been developed to infer lncRNA-disease associations. However, most of these methods infer lncRNA-disease associations only based on single data resource.
Results: In this paper, we propose a new computational method to predict lncRNA-disease associations by integrating multiple biological data resources. Then, we implement this method as a web server for lncRNA-disease association prediction (LDAP). The input of the LDAP server is the lncRNA sequence. The LDAP predicts potential lncRNA-disease associations by using a bagging SVM classifier based on lncRNA similarity and disease similarity.
Availability and implementation: The web server is available at http://bioinformatics.csu.edu.cn/ldap
Contact: jxwang@mail.csu.edu.cn.
Supplimentary information: Supplementary data are available at Bioinformatics online.
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