LDAP: a web server for lncRNA-disease association prediction

Abstract

Motivation: Increasing evidences have demonstrated that long noncoding RNAs (lncRNAs) play important roles in many human diseases. Therefore, predicting novel lncRNA-disease associations would contribute to dissect the complex mechanisms of disease pathogenesis. Some computational methods have been developed to infer lncRNA-disease associations. However, most of these methods infer lncRNA-disease associations only based on single data resource.

Results: In this paper, we propose a new computational method to predict lncRNA-disease associations by integrating multiple biological data resources. Then, we implement this method as a web server for lncRNA-disease association prediction (LDAP). The input of the LDAP server is the lncRNA sequence. The LDAP predicts potential lncRNA-disease associations by using a bagging SVM classifier based on lncRNA similarity and disease similarity.

Availability and implementation: The web server is available at http://bioinformatics.csu.edu.cn/ldap

Contact: jxwang@mail.csu.edu.cn.

Supplimentary information: Supplementary data are available at Bioinformatics online.