A compilation of Web-based research tools for miRNA analysis
- PMID: 28334134
- DOI: 10.1093/bfgp/elw042
A compilation of Web-based research tools for miRNA analysis
Abstract
Since the discovery of microRNAs (miRNAs), a class of noncoding RNAs that regulate the gene expression posttranscriptionally in sequence-specific manner, there has been a release of number of tools useful for both basic and advanced applications. This is because of the significance of miRNAs in many pathophysiological conditions including cancer. Numerous bioinformatics tools that have been developed for miRNA analysis have their utility for detection, expression, function, target prediction and many other related features. This review provides a comprehensive assessment of web-based tools for the miRNA analysis that does not require prior knowledge of any computing languages.
Keywords: databases; diseases; microRNA; online tools.
© The Author 2017. Published by Oxford University Press. All rights reserved. For permissions, please email: journals.permissions@oup.com.
Similar articles
-
An Overview of miRNA and miRNA Target Analysis Tools.Methods Mol Biol. 2019;1932:65-87. doi: 10.1007/978-1-4939-9042-9_5. Methods Mol Biol. 2019. PMID: 30701492 Review.
-
Functional Analysis of miRNAs Using the DIANA Tools Online Suite.Methods Mol Biol. 2017;1517:25-50. doi: 10.1007/978-1-4939-6563-2_2. Methods Mol Biol. 2017. PMID: 27924472
-
miRQuest: integration of tools on a Web server for microRNA research.Genet Mol Res. 2016 Mar 28;15(1). doi: 10.4238/gmr.15016861. Genet Mol Res. 2016. PMID: 27050998
-
Prediction of human microRNA targets.Methods Mol Biol. 2006;342:101-13. doi: 10.1385/1-59745-123-1:101. Methods Mol Biol. 2006. PMID: 16957370 Review.
-
Web resources for microRNA research.Adv Exp Med Biol. 2013;774:225-50. doi: 10.1007/978-94-007-5590-1_12. Adv Exp Med Biol. 2013. PMID: 23377976 Review.
Cited by
-
Bioinformatic Tools for the Identification of MicroRNAs Regulating the Transcription Factors in Patients with β-Thalassemia.Bioinform Biol Insights. 2022 Aug 3;16:11779322221115536. doi: 10.1177/11779322221115536. eCollection 2022. Bioinform Biol Insights. 2022. PMID: 35935529 Free PMC article. Review.
-
miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal.Database (Oxford). 2018 Jan 1;2018:bay004. doi: 10.1093/database/bay004. Database (Oxford). 2018. PMID: 29688355 Free PMC article.
-
An Approach to Identify Individual Functional Single Nucleotide Polymorphisms and Isoform MicroRNAs.Biomed Res Int. 2019 Jul 30;2019:6193673. doi: 10.1155/2019/6193673. eCollection 2019. Biomed Res Int. 2019. PMID: 31467902 Free PMC article.
-
Improved protein expression in HEK293 cells by over-expressing miR-22 and knocking-out its target gene, HIPK1.N Biotechnol. 2020 Jan 25;54:28-33. doi: 10.1016/j.nbt.2019.08.004. Epub 2019 Aug 16. N Biotechnol. 2020. PMID: 31425885 Free PMC article.
-
Integrative approaches for analysis of mRNA and microRNA high-throughput data.Comput Struct Biotechnol J. 2021 Jan 26;19:1154-1162. doi: 10.1016/j.csbj.2021.01.029. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 33680358 Free PMC article. Review.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
