Mean Direct-Transit and Looping Times as Functions of the Potential Shape
- PMID: 28475835
- PMCID: PMC5580047
- DOI: 10.1021/acs.jpcb.7b04037
Mean Direct-Transit and Looping Times as Functions of the Potential Shape
Abstract
Any trajectory of a diffusing particle making a transition between two end points of an interval can be divided into two segments, which we call direct-transit and looping parts. The former is the final segment of the trajectory, when the particle goes from one end point of the interval to the opposite end point, without retouching the starting point. The rest of the trajectory is the looping part. We study mean durations of the two parts in the presence of a symmetric linear cusp potential which, depending on the parameter values, forms either a barrier or a well between the end points. For the cusp barrier, we find that the mean direct-transit time decreases as the barrier height increases at a fixed interval length. This happens because the increase in the barrier height results in the increase of the magnitude of the force acting on the particle on both sides of the barrier. Interestingly, though the mean looping and direct-transit times are different in the case of the barrier and well potentials with equal height and depth, respectively, the mean first-passage times for the two cases are identical.
Conflict of interest statement
The authors declare no competing financial interest.
Figures




Similar articles
-
First passage, looping, and direct transition in expanding and narrowing tubes: Effects of the entropy potential.J Chem Phys. 2017 Oct 7;147(13):134104. doi: 10.1063/1.4993129. J Chem Phys. 2017. PMID: 28987083 Free PMC article.
-
Exact Solutions for Distributions of First-Passage, Direct-Transit, and Looping Times in Symmetric Cusp Potential Barriers and Wells.J Phys Chem B. 2019 May 2;123(17):3786-3796. doi: 10.1021/acs.jpcb.9b01616. Epub 2019 Apr 23. J Phys Chem B. 2019. PMID: 30964994 Free PMC article.
-
Peculiarities of the Mean Transition Path Time Dependence on the Barrier Height in Entropy Potentials.J Phys Chem B. 2020 Mar 26;124(12):2305-2310. doi: 10.1021/acs.jpcb.9b09595. Epub 2020 Mar 16. J Phys Chem B. 2020. PMID: 32176487 Free PMC article.
-
Technological strategies to estimate and control diffusive passage times through the mucus barrier in mucosal drug delivery.Adv Drug Deliv Rev. 2018 Jan 15;124:64-81. doi: 10.1016/j.addr.2017.12.002. Epub 2017 Dec 12. Adv Drug Deliv Rev. 2018. PMID: 29246855 Free PMC article. Review.
-
Recent developments in the kinetic theory of nucleation.Adv Colloid Interface Sci. 2005 Dec 30;118(1-3):51-72. doi: 10.1016/j.cis.2005.06.001. Epub 2005 Aug 30. Adv Colloid Interface Sci. 2005. PMID: 16137628 Review.
Cited by
-
The significance of fuzzy boundaries of the barrier regions in single-molecule measurements of failed barrier crossing attempts.J Chem Phys. 2024 Sep 14;161(10):101101. doi: 10.1063/5.0227497. J Chem Phys. 2024. PMID: 39248382
-
A new insight into diffusional escape from a biased cylindrical trap.J Chem Phys. 2017 Sep 14;147(10):104103. doi: 10.1063/1.5002127. J Chem Phys. 2017. PMID: 28915752 Free PMC article.
-
On distributions of barrier crossing times as observed in single-molecule studies of biomolecules.Biophys Rep (N Y). 2021 Oct 22;1(2):100029. doi: 10.1016/j.bpr.2021.100029. eCollection 2021 Dec 8. Biophys Rep (N Y). 2021. PMID: 36425456 Free PMC article.
-
First passage, looping, and direct transition in expanding and narrowing tubes: Effects of the entropy potential.J Chem Phys. 2017 Oct 7;147(13):134104. doi: 10.1063/1.4993129. J Chem Phys. 2017. PMID: 28987083 Free PMC article.
-
Learning continuous potentials from smFRET.Biophys J. 2023 Jan 17;122(2):433-441. doi: 10.1016/j.bpj.2022.11.2947. Epub 2022 Dec 5. Biophys J. 2023. PMID: 36463404 Free PMC article.
References
-
- Hummer G. From Transition Paths to Transition States and Rate Coefficients. J Chem Phys. 2004;120:516–523. - PubMed
-
- Rhoades E, Cohen M, Schuler B, Haran G. Two-State Folding Observed in Individual Protein Molecules. J Am Chem Soc. 2004;126:14686–14687. - PubMed
-
- Metzner P, Schutte C, Vanden-Eijnden E. Illustration of Transition Path Theory on a Collection of Simple Examples. J Chem Phys. 2006;125:084110. - PubMed
-
- Weinan E, Vanden-Eijnden E. Towards a Theory of Transition Paths. J Stat Phys. 2006;123:503–523.
Publication types
MeSH terms
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources
Miscellaneous