Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
Review
. 2017 Aug:38:137-141.
doi: 10.1016/j.mib.2017.05.011. Epub 2017 Jun 12.

The scales of the zebrafish: host-microbiota interactions from proteins to populations

Affiliations
Review

The scales of the zebrafish: host-microbiota interactions from proteins to populations

Adam R Burns et al. Curr Opin Microbiol. 2017 Aug.

Abstract

The interactions between animal hosts and their associated microbiota can be studied at multiple spatial and conceptual scales, with each providing unique perspectives on the processes structuring host-microbe systems. Recently, zebrafish, Danio rerio, has emerged as a powerful model in which to study these interactions at many different scales. Controlled but simplified gnotobiotic experiments enable discovery of the molecules and cellular dynamics that shape host-microbe system development, whereas population level investigations of bacterial dispersal and transmission are beginning to reveal the processes shaping microbiota assembly across hosts. Here we review recent examples of these studies and discuss how the results can be integrated to better understand host-microbiota systems.

PubMed Disclaimer

Conflict of interest statement

Conflict of Interest Statement

None of the authors have any financial or non-financial competing interests to declare.

References

    1. Chase JM, Myers JA. Disentangling the importance of ecological niches from stochastic processes across scales. Philos Trans R Soc London B Biol Sci. 2011;366 - PMC - PubMed
    1. Münkemüller T, Gallien L, Lavergne S, Renaud J, Roquet C, Abdulhak S, Dullinger S, Garraud L, Guisan A, Lenoir J, et al. Scale decisions can reverse conclusions on community assembly processes. Glob Ecol Biogeogr. 2014;23:620–632. - PMC - PubMed
    1. Melancon E, Gomez De La Torre Canny S, Sichel S, Kelly M, Wiles TJ, Rawls JF, Eisen JS, Guillemin K. Chapter 3 — Best practices for germ-free derivation and gnotobiotic zebrafish husbandry. Methods Cell Biol. 2017;138:61–100. - PMC - PubMed
    1. Taormina MJ, Jemielita M, Zac Stephens W, Burns AR, Troll JV, Parthasarathy R, Guillemin K. Investigating bacterial-animal symbioses with light sheet microscopy. Biol Bull. 2012;223:7–20. - PMC - PubMed
    1. Bates JM, Mittge E, Kuhlman J, Baden KN, Cheesman SE, Guillemin K. Distinct signals from the microbiota promote different aspects of zebrafish gut differentiation. Dev Biol. 2006;297:374–386. - PubMed