Rare-event sampling in ligand diffusion: Reply to comments on "Ligand diffusion in proteins via enhanced sampling in molecular dynamics"
- PMID: 28939479
- DOI: 10.1016/j.plrev.2017.08.011
Rare-event sampling in ligand diffusion: Reply to comments on "Ligand diffusion in proteins via enhanced sampling in molecular dynamics"
Keywords: Biased molecular dynamics; Ligand diffusion; Rare-event sampling.
Comment on
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Toward more efficient simulations of slow processes in large biomolecular systems: Comment on "Ligand diffusion in proteins via enhanced sampling in molecular dynamics" by Jakub Rydzewski and Wieslaw Nowak.Phys Life Rev. 2017 Dec;22-23:75-76. doi: 10.1016/j.plrev.2017.07.003. Epub 2017 Aug 1. Phys Life Rev. 2017. PMID: 28781239 No abstract available.
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Finding optimal paths through biomolecular mazes: Comment on: "Ligand diffusion in proteins via enhanced sampling in molecular dynamics" by J. Rydzewski and W. Nowak.Phys Life Rev. 2017 Dec;22-23:77-78. doi: 10.1016/j.plrev.2017.08.001. Epub 2017 Aug 4. Phys Life Rev. 2017. PMID: 28797667 No abstract available.
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Ligand migration and steered molecular dynamics in drug discovery: Comment on "Ligand diffusion in proteins via enhanced sampling in molecular dynamics" by Jakub Rydzewski and Wieslaw Nowak.Phys Life Rev. 2017 Dec;22-23:79-81. doi: 10.1016/j.plrev.2017.08.006. Epub 2017 Aug 10. Phys Life Rev. 2017. PMID: 28807592 No abstract available.
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Direct in silico visualization of ligands channelling through proteins: The next-generation frontier of computational biology: Comment on 'Ligand diffusion via enhanced sampling molecular dynamics' by Jakub Rydzewski and Wieslaw Nowak.Phys Life Rev. 2017 Dec;22-23:82-84. doi: 10.1016/j.plrev.2017.08.004. Epub 2017 Aug 10. Phys Life Rev. 2017. PMID: 28818495 No abstract available.
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