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. 2017 Sep 18:14:56-62.
doi: 10.1016/j.gdata.2017.09.002. eCollection 2017 Dec.

A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3)

A Canaguier  1   2 , J Grimplet  3 , G Di Gaspero  4 , S Scalabrin  4 , E Duchêne  5 , N Choisne  6 , N Mohellibi  6 , C Guichard  1   7 , S Rombauts  8   9 , I Le Clainche  1   2 , A Bérard  2 , A Chauveau  2 , R Bounon  1   2 , C Rustenholz  5 , M Morgante  4 , M-C Le Paslier  2 , D Brunel  2 , A-F Adam-Blondon  1   6
Affiliations

A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3)

A Canaguier et al. Genom Data. .
No abstract available

Keywords: Chromosomes assembly; Gene annotation; Genome; Vitis vinifera.

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Figures

Fig. 1
Fig. 1
Circular diagram of the transposition of the scaffolds from the unknown chromosome of the 12X.v0 genome assembly (black) to the chromosomes in the 12X.v2 assembly.
Fig. 2
Fig. 2
Number of non-redundant loci mapped on each grapevine chromosome using the three segregating populations.
Fig. 3
Fig. 3
Percentage of the genome sequence (i) ordered on the 19 grapevine chromosomes in the current version of the assembly (12X.v0, in green) and in the new version (12X.v2, in blue), (ii) assigned to a chromosome but with uncertain order or (iii) not assigned to any chromosome.
Fig. 4
Fig. 4
Total size of the sequence scaffolds which order is uncertain for the 19 chromosomes in the 12X.v0 (green bars) compared to the 12X.v2 (blue bars) versions of the grapevine reference genome sequence.
Fig. 5
Fig. 5
Total size of the scaffolds which are ordered and oriented for each of the 19 chromosomes in the 12X.v0 version of the grapevine genome assembly (green bars) compared to the 12X.v2 version (blue bars).
Fig. 6
Fig. 6
Example of alignment between the gene models from the 3 annotations showing chimeric genes for pectinesterases genes. In brackets HO/QO scores.
See this image and copyright information in PMC

References

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