A sumatriptan coarse-grained model to explore different environments: interplay with experimental techniques
- PMID: 29376196
- DOI: 10.1007/s00249-018-1278-2
A sumatriptan coarse-grained model to explore different environments: interplay with experimental techniques
Abstract
In this work, we developed a coarse-grained model of sumatriptan suitable for extensive molecular dynamics simulations. First, we confirmed the interfacial distribution of this drug in bilayers through cryogenic transmission electron microscopy and small-angle X-ray scattering techniques, as was predicted by our previous atomistic simulations. Based on these simulations, we developed a coarse-grained model for sumatriptan able to reproduce its overall molecular behavior, captured by atomistic simulations and experiments. We then tested the sumatriptan model in a micellar environment along with experimental characterization of sumatriptan-loaded micelles. The simulation results showed good agreement with photon correlation spectroscopy and electrophoretic mobility experiments performed in this work. The particle size of the obtained micelles was comparable with the simulated ones; meanwhile, zeta-potential results suggest adsorption of the drug on the micellar surface. This model is a step forward in the search for a suitable drug-delivery system for sumatriptan.
Keywords: Coarse-grained model; Cryo-TEM; Molecular dynamics; SAXS; Sumatriptan.
Similar articles
-
Combining nuclear magnetic resonance with molecular dynamics simulations to address sumatriptan interaction with model membranes.Chem Phys Lipids. 2019 Dec;225:104792. doi: 10.1016/j.chemphyslip.2019.104792. Epub 2019 Jul 27. Chem Phys Lipids. 2019. PMID: 31361986
-
Properties of Poloxamer Molecules and Poloxamer Micelles Dissolved in Water and Next to Lipid Bilayers: Results from Computer Simulations.J Phys Chem B. 2016 Jul 7;120(26):5823-30. doi: 10.1021/acs.jpcb.5b11448. Epub 2016 Jan 14. J Phys Chem B. 2016. PMID: 26719970
-
Scattering density profile model of POPG bilayers as determined by molecular dynamics simulations and small-angle neutron and X-ray scattering experiments.J Phys Chem B. 2012 Jan 12;116(1):232-9. doi: 10.1021/jp208920h. Epub 2011 Dec 14. J Phys Chem B. 2012. PMID: 22107350
-
Hybrid Methods for Macromolecular Modeling by Molecular Mechanics Simulations with Experimental Data.Adv Exp Med Biol. 2018;1105:199-217. doi: 10.1007/978-981-13-2200-6_13. Adv Exp Med Biol. 2018. PMID: 30617831 Review.
-
An overview of molecular dynamics simulations of oxidized lipid systems, with a comparison of ELBA and MARTINI force fields for coarse grained lipid simulations.Biochim Biophys Acta. 2016 Oct;1858(10):2498-2511. doi: 10.1016/j.bbamem.2016.03.031. Epub 2016 Apr 6. Biochim Biophys Acta. 2016. PMID: 27058982 Review.
Cited by
-
Understanding Conformational Dynamics of Complex Lipid Mixtures Relevant to Biology.J Membr Biol. 2018 Dec;251(5-6):609-631. doi: 10.1007/s00232-018-0050-y. Epub 2018 Oct 22. J Membr Biol. 2018. PMID: 30350011 Free PMC article. Review.
-
Magnesium interactions with a CX26 connexon in lipid bilayers.J Mol Model. 2019 Jul 20;25(8):232. doi: 10.1007/s00894-019-4121-5. J Mol Model. 2019. PMID: 31327057
-
The Martini Model in Materials Science.Adv Mater. 2021 Jun;33(24):e2008635. doi: 10.1002/adma.202008635. Epub 2021 May 6. Adv Mater. 2021. PMID: 33956373 Free PMC article.
References
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources