Rice Functional Genomics Research: Past Decade and Future
- PMID: 29409893
- DOI: 10.1016/j.molp.2018.01.007
Rice Functional Genomics Research: Past Decade and Future
Abstract
Rice (Oryza sativa) is a major staple food crop for more than 3.5 billion people worldwide. Understanding the regulatory mechanisms of complex agronomic traits in rice is critical for global food security. Rice is also a model plant for genomics research of monocotyledons. Thanks to the rapid development of functional genomic technologies, over 2000 genes controlling important agronomic traits have been cloned, and their molecular biological mechanisms have also been partially characterized. Here, we briefly review the advances in rice functional genomics research during the past 10 years, including a summary of functional genomics platforms, genes and molecular regulatory networks that regulate important agronomic traits, and newly developed tools for gene identification. These achievements made in functional genomics research will greatly facilitate the development of green super rice. We also discuss future challenges and prospects of rice functional genomics research.
Keywords: Oryza sativa; functional genomics; gene identification; green super rice.
Copyright © 2018 The Author. Published by Elsevier Inc. All rights reserved.
Similar articles
-
A computational interactome for prioritizing genes associated with complex agronomic traits in rice (Oryza sativa).Plant J. 2017 Apr;90(1):177-188. doi: 10.1111/tpj.13475. Epub 2017 Mar 4. Plant J. 2017. PMID: 28074633
-
Resequencing rice genomes: an emerging new era of rice genomics.Trends Genet. 2013 Apr;29(4):225-32. doi: 10.1016/j.tig.2012.12.001. Epub 2013 Jan 4. Trends Genet. 2013. PMID: 23295340 Review.
-
Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication.BMC Plant Biol. 2016 Apr 26;16:103. doi: 10.1186/s12870-016-0788-2. BMC Plant Biol. 2016. PMID: 27118394 Free PMC article.
-
Genome-wide introgression lines and their use in genetic and molecular dissection of complex phenotypes in rice (Oryza sativa L.).Plant Mol Biol. 2005 Sep;59(1):33-52. doi: 10.1007/s11103-005-8519-3. Plant Mol Biol. 2005. PMID: 16217600
-
Rice Genomics: over the Past Two Decades and into the Future.Genomics Proteomics Bioinformatics. 2018 Dec;16(6):397-404. doi: 10.1016/j.gpb.2019.01.001. Epub 2019 Feb 13. Genomics Proteomics Bioinformatics. 2018. PMID: 30771506 Free PMC article. Review.
Cited by
-
Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality.Front Plant Sci. 2020 Jul 29;11:1150. doi: 10.3389/fpls.2020.01150. eCollection 2020. Front Plant Sci. 2020. PMID: 32849708 Free PMC article.
-
Improving Yield and Yield Stability in Winter Rye by Hybrid Breeding.Plants (Basel). 2022 Oct 10;11(19):2666. doi: 10.3390/plants11192666. Plants (Basel). 2022. PMID: 36235531 Free PMC article. Review.
-
The Pyramiding of Elite Allelic Genes Related to Grain Number Increases Grain Number per Panicle Using the Recombinant Lines Derived from Indica-japonica Cross in Rice.Int J Mol Sci. 2023 Jan 14;24(2):1653. doi: 10.3390/ijms24021653. Int J Mol Sci. 2023. PMID: 36675168 Free PMC article.
-
Reverse genetic approaches for breeding nutrient-rich and climate-resilient cereal and food legume crops.Heredity (Edinb). 2022 Jun;128(6):473-496. doi: 10.1038/s41437-022-00513-5. Epub 2022 Mar 5. Heredity (Edinb). 2022. PMID: 35249099 Free PMC article.
-
Advanced high-throughput plant phenotyping techniques for genome-wide association studies: A review.J Adv Res. 2021 May 12;35:215-230. doi: 10.1016/j.jare.2021.05.002. eCollection 2022 Jan. J Adv Res. 2021. PMID: 35003802 Free PMC article. Review.
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources
Other Literature Sources
Miscellaneous