First Complete Genome Sequences of Human Sapovirus Strains Classified as GI.3, GI.4, GI.6, GI.7, and GII.7

doi:10.1128/genomeA.00168-18

. 2018 Mar 22;6(12):e00168-18.

doi: 10.1128/genomeA.00168-18.

First Complete Genome Sequences of Human Sapovirus Strains Classified as GI.3, GI.4, GI.6, GI.7, and GII.7

Tomoichiro Oka¹, Nobuhiro Iritani², Mineyuki Okada³, Tomoko Ogawa⁴, Setsuko Iizuka⁵, Chika Tatsumi⁵, Seiya Harada⁶, Kei Haga⁷, Yen Hai Doan⁷

Affiliations

¹ Department of Virology II, National Institute of Infectious Diseases, Tokyo, Japan oka-t@nih.go.jp.
² Division of Microbiology, Osaka Institute of Public Health, Osaka, Japan.
³ Chiba Prefecture Toso Meat Inspection Office, Chiba, Japan.
⁴ Division of Virology, Chiba Prefectural Institute of Public Health, Chiba, Japan.
⁵ Division of Virology, Shimane Prefectural Institute of Public Health and Environmental Science, Shimane, Japan.
⁶ Department of Microbiology, Kumamoto Prefectural Institute of Public Health and Environmental Science, Kumamoto, Japan.
⁷ Department of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.

PMID: 29567738
PMCID: PMC5864949
DOI: 10.1128/genomeA.00168-18

First Complete Genome Sequences of Human Sapovirus Strains Classified as GI.3, GI.4, GI.6, GI.7, and GII.7

Tomoichiro Oka et al. Genome Announc. 2018.

. 2018 Mar 22;6(12):e00168-18.

doi: 10.1128/genomeA.00168-18.

Authors

Tomoichiro Oka¹, Nobuhiro Iritani², Mineyuki Okada³, Tomoko Ogawa⁴, Setsuko Iizuka⁵, Chika Tatsumi⁵, Seiya Harada⁶, Kei Haga⁷, Yen Hai Doan⁷

Affiliations

¹ Department of Virology II, National Institute of Infectious Diseases, Tokyo, Japan oka-t@nih.go.jp.
² Division of Microbiology, Osaka Institute of Public Health, Osaka, Japan.
³ Chiba Prefecture Toso Meat Inspection Office, Chiba, Japan.
⁴ Division of Virology, Chiba Prefectural Institute of Public Health, Chiba, Japan.
⁵ Division of Virology, Shimane Prefectural Institute of Public Health and Environmental Science, Shimane, Japan.
⁶ Department of Microbiology, Kumamoto Prefectural Institute of Public Health and Environmental Science, Kumamoto, Japan.
⁷ Department of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.

PMID: 29567738
PMCID: PMC5864949
DOI: 10.1128/genomeA.00168-18

Abstract

We report here the first complete genome sequences of genotype GI.3, GI.4, GI.6, GI.7, and GII.7 sapovirus strains, detected from fecal samples of acute gastroenteritis patients. Complete or nearly complete genome sequences of all 18 genotypes of human sapoviruses are now available for phylogenetic analysis and primer design.

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References

1. Harada S, Okada M, Yahiro S, Nishimura K, Matsuo S, Miyasaka J, Nakashima R, Shimada Y, Ueno T, Ikezawa S, Shinozaki K, Katayama K, Wakita T, Takeda N, Oka T. 2009. Surveillance of pathogens in outpatients with gastroenteritis and characterization of sapovirus strains between 2002 and 2007 in Kumamoto Prefecture, Japan. J Med Virol 81:1117–1127. doi: 10.1002/jmv.21454. - DOI - PubMed
1. Iizuka S, Oka T, Tabara K, Omura T, Katayama K, Takeda N, Noda M. 2010. Detection of sapoviruses and noroviruses in an outbreak of gastroenteritis linked genetically to shellfish. J Med Virol 82:1247–1254. doi: 10.1002/jmv.21791. - DOI - PubMed
1. Okada M, Yamashita Y, Oseto M, Ogawa T, Kaiho I, Shinozaki K. 2006. Genetic variability in the sapovirus capsid protein. Virus Genes 33:157–161. doi: 10.1007/s11262-005-0051-7. - DOI - PubMed
1. Iritani N, Yamamoto SP, Abe N, Kubo H, Oka T, Kaida A. 2016. Epidemics of GI.2 sapovirus in gastroenteritis outbreaks during 2012–2013 in Osaka City, Japan. J Med Virol 88:1187–1193. doi: 10.1002/jmv.24451. - DOI - PubMed
1. Oka T, Wang Q, Katayama K, Saif LJ. 2015. Comprehensive review of human sapoviruses. Clin Microbiol Rev 28:32–53. doi: 10.1128/CMR.00011-14. - DOI - PMC - PubMed

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[1] Harada S, Okada M, Yahiro S, Nishimura K, Matsuo S, Miyasaka J, Nakashima R, Shimada Y, Ueno T, Ikezawa S, Shinozaki K, Katayama K, Wakita T, Takeda N, Oka T. 2009. Surveillance of pathogens in outpatients with gastroenteritis and characterization of sapovirus strains between 2002 and 2007 in Kumamoto Prefecture, Japan. J Med Virol 81:1117–1127. doi: 10.1002/jmv.21454. - DOI - PubMed

[2] Harada S, Okada M, Yahiro S, Nishimura K, Matsuo S, Miyasaka J, Nakashima R, Shimada Y, Ueno T, Ikezawa S, Shinozaki K, Katayama K, Wakita T, Takeda N, Oka T. 2009. Surveillance of pathogens in outpatients with gastroenteritis and characterization of sapovirus strains between 2002 and 2007 in Kumamoto Prefecture, Japan. J Med Virol 81:1117–1127. doi: 10.1002/jmv.21454. - DOI - PubMed

[3] Iizuka S, Oka T, Tabara K, Omura T, Katayama K, Takeda N, Noda M. 2010. Detection of sapoviruses and noroviruses in an outbreak of gastroenteritis linked genetically to shellfish. J Med Virol 82:1247–1254. doi: 10.1002/jmv.21791. - DOI - PubMed

[4] Iizuka S, Oka T, Tabara K, Omura T, Katayama K, Takeda N, Noda M. 2010. Detection of sapoviruses and noroviruses in an outbreak of gastroenteritis linked genetically to shellfish. J Med Virol 82:1247–1254. doi: 10.1002/jmv.21791. - DOI - PubMed

[5] Okada M, Yamashita Y, Oseto M, Ogawa T, Kaiho I, Shinozaki K. 2006. Genetic variability in the sapovirus capsid protein. Virus Genes 33:157–161. doi: 10.1007/s11262-005-0051-7. - DOI - PubMed

[6] Okada M, Yamashita Y, Oseto M, Ogawa T, Kaiho I, Shinozaki K. 2006. Genetic variability in the sapovirus capsid protein. Virus Genes 33:157–161. doi: 10.1007/s11262-005-0051-7. - DOI - PubMed

[7] Iritani N, Yamamoto SP, Abe N, Kubo H, Oka T, Kaida A. 2016. Epidemics of GI.2 sapovirus in gastroenteritis outbreaks during 2012–2013 in Osaka City, Japan. J Med Virol 88:1187–1193. doi: 10.1002/jmv.24451. - DOI - PubMed

[8] Iritani N, Yamamoto SP, Abe N, Kubo H, Oka T, Kaida A. 2016. Epidemics of GI.2 sapovirus in gastroenteritis outbreaks during 2012–2013 in Osaka City, Japan. J Med Virol 88:1187–1193. doi: 10.1002/jmv.24451. - DOI - PubMed

[9] Oka T, Wang Q, Katayama K, Saif LJ. 2015. Comprehensive review of human sapoviruses. Clin Microbiol Rev 28:32–53. doi: 10.1128/CMR.00011-14. - DOI - PMC - PubMed

[10] Oka T, Wang Q, Katayama K, Saif LJ. 2015. Comprehensive review of human sapoviruses. Clin Microbiol Rev 28:32–53. doi: 10.1128/CMR.00011-14. - DOI - PMC - PubMed

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First Complete Genome Sequences of Human Sapovirus Strains Classified as GI.3, GI.4, GI.6, GI.7, and GII.7

Affiliations

First Complete Genome Sequences of Human Sapovirus Strains Classified as GI.3, GI.4, GI.6, GI.7, and GII.7

Authors

Affiliations

Abstract

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