Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
Review
. 2018 Apr 5;14(4):e1005993.
doi: 10.1371/journal.pcbi.1005993. eCollection 2018 Apr.

Automated plant species identification-Trends and future directions

Affiliations
Review

Automated plant species identification-Trends and future directions

Jana Wäldchen et al. PLoS Comput Biol. .

Abstract

Current rates of species loss triggered numerous attempts to protect and conserve biodiversity. Species conservation, however, requires species identification skills, a competence obtained through intensive training and experience. Field researchers, land managers, educators, civil servants, and the interested public would greatly benefit from accessible, up-to-date tools automating the process of species identification. Currently, relevant technologies, such as digital cameras, mobile devices, and remote access to databases, are ubiquitously available, accompanied by significant advances in image processing and pattern recognition. The idea of automated species identification is approaching reality. We review the technical status quo on computer vision approaches for plant species identification, highlight the main research challenges to overcome in providing applicable tools, and conclude with a discussion of open and future research thrusts.

PubMed Disclaimer

Conflict of interest statement

The authors have declared that no competing interests exist.

Figures

Fig 1
Fig 1. Fundamental steps of supervised machine learning for image-based species identification.
Fig 2
Fig 2. Botanists' (left) versus computer vision (right) description of flowers.
Fig 3
Fig 3
Visual variation of Lapsana communis's flower throughout the day from two perspectives (left) and visual variation of Centaurea pseudophrygia's flower throughout the season and flowering stage (right).

References

    1. Darwin Charles R. On the origin of species by means of natural selection, or the preservation of favoured races in the struggle for life. Murray, London. 1859. - PMC - PubMed
    1. Remagnino P, Mayo S, Wilkin P, Cope J, Kirkup D. Computational Botany: Methods for Automated Species Identification. Springer; 2016.
    1. Hagedorn G, Rambold G, Martellos S. Types of identification keys In: Tools for Identifying Biodiversity: Progress and Problems. EUT Edizioni Università di Trieste; 2010. pp. 59–64.
    1. Scotland RW, Wortley AH. How many species of seed plants are there? Taxon. 2003;52(1):101–104.
    1. Mora C, Tittensor DP, Adl S, Simpson AG, Worm B. How many species are there on Earth and in the ocean? PLoS Biol. 2011;9(8):e1001127 doi: 10.1371/journal.pbio.1001127 - DOI - PMC - PubMed

Publication types

MeSH terms