Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2018 Jan 1:2018:bax096.
doi: 10.1093/database/bax096.

A generic workflow for effective sampling of environmental vouchers with UUID assignment and image processing

Dagmar Triebel  1 , Wolfgang Reichert  1 , Simone Bosert  2 , Martin Feulner  2 , Daniel Osieko Okach  3 , Abderachid Slimani  4 , Gerhard Rambold  2
Affiliations

A generic workflow for effective sampling of environmental vouchers with UUID assignment and image processing

Dagmar Triebel et al. Database (Oxford). .

Abstract

http://diversityworkbench.net/Portal/DiversityImageInspector.

PubMed Disclaimer

Figures

Figure 1.
Figure 1.
UUID-QR labelled boxes prepared on stock.
Figure 2.
Figure 2.
UUID-QR labelled box with soil sample being imaged at the sampling site Ruma (Kenya) with a digital camera with GNSS resp. GPS functionality.
Figure 3.
Figure 3.
DII user interface. Image files renamed with prefix and the first 8 letters and digits of the version 4 UUID included.
Figure 4.
Figure 4.
DII export in CSV-formatted text with GNSS coordinates and UUID.
Figure 5.
Figure 5.
DC Import Wizard with information exported from DII.
Figure 6.
Figure 6.
Data record in the relational database DC: objects identifier, information on occurrence, data processing and link to object images.
Figure 7.
Figure 7.
Simplified dataflow from digital camera to CSV document via DII with image storage and data import into the database DC.
See this image and copyright information in PMC

References

    1. Diepenbroek M., Glöckner F., Grobe P.. et al. (2014) Towards an integrated biodiversity and ecological research data management and archiving platform: the German federation for the curation of biological data (GFBio). In: Plödereder, E., Grunske, L., Schneider, E. and Ull, D. (eds). Proceedings of Informatik 2014–Big Data Komplexität meistern. GI-Edition: Lecture Notes in Informatics (LNI), Vol. 232, Köllen Verlag, Bonn, pp. 1711–1724.
    1. Guralnick R.P., Cellinese N., Deck J.. et al. (2015) Community next steps for making globally unique identifiers work for biocollections data. ZooKeys, 494, 133–154.10.3897/zookeys.494.9352 - DOI - PMC - PubMed
    1. Leach P., Mealling M., Salz R. (2005) A Universally Unique IDentifier (UUID) URN Namespace, 1-31 http://www.ietf.org/rfc/rfc4122.txt (8 December 2017, date last accessed).
    1. The Open Group. (1997) CAE Specification. CDE 1.1: Remote Procedure Call. Document C706. Appendix: Universal Unique Identifier http://pubs.opengroup.org/onlinepubs/9629399/apdxa.htm
    1. Wilkinson M.D., Dumontier M., Aalbersberg I.J.. et al. (2016) The FAIR Guiding Principles for scientific data management and stewardship. Sci. Data, 3, 160018..10.1038/sdata.2016.18 - DOI - PMC - PubMed

Publication types

MeSH terms

LinkOut - more resources