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. 2018 Jan 1:2018:bax106.
doi: 10.1093/database/bax106.

FishTEDB: a collective database of transposable elements identified in the complete genomes of fish

Feng Shao  1 , Jianrong Wang  2 , Hongen Xu  3 , Zuogang Peng  1
Affiliations

FishTEDB: a collective database of transposable elements identified in the complete genomes of fish

Feng Shao et al. Database (Oxford). .

Abstract

http://www.fishtedb.org/.

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Figures

Figure 1.
Figure 1.
Flowchart of the TE analysis pipeline.
Figure 2.
Figure 2.
User interface introduction. (A) Browsing data shown in a superfamily-centric way; (B) Browsing data shown in a species-centric way.
Figure 3.
Figure 3.
Snapshots of different functional sections provided in FishTEDB. (A) Screenshot of a keyword search results; (B) BLAST interface and a sample of BLASTn results; (C) GetORF interface and output results; (D) HMMER interface of a test protein sequence in FishTEDB.
Figure 4.
Figure 4.
The statistics of consensus sequences. (A) Pie chart of different classes and orders; (B) Histogram of different superfamilies in TIR.
See this image and copyright information in PMC

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References

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