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. 2018 Jan 1:2018:bay035.
doi: 10.1093/database/bay035.

SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases

Hartmut Foerster  1 , Aureliano Bombarely  2 , James N D Battey  3 , Nicolas Sierro  3 , Nikolai V Ivanov  3 , Lukas A Mueller  1
Affiliations

SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases

Hartmut Foerster et al. Database (Oxford). .

Abstract

https://solgenomics.net/tools/solcyc/.

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Figures

Figure 1.
Figure 1.
Creation and curation flux of SolanaCyc (explanation see text).
Figure 2.
Figure 2.
SolanaCyc pathway breakdown into metabolic categories.
Figure 3.
Figure 3.
Representation of the ?-tomatine biosynthesis in SolanaCyc. (A) Pathway diagram. (B) Indicative evidence for the curation status of the pathway. Hyperlinks to related pathways that either feed into (C) or branch out (D) of the pathway. (E) Structure of pathway compounds after increasing the detail of the pathway. (F) Pathway summary with (G) corresponding literature that is linked to external databases (see also text).
Figure 4.
Figure 4.
Assessment of the Nicotiana genome completeness. The percentages of the 1440 embryophyta single-copy orthologs identified in one complete copy (Complete), more than one complete copy (Duplicated), partially (Fragmented) or not identified (Missing) are shown.
Figure 5.
Figure 5.
Distribution of predicted pathways across the various compound classes in the Cyc's for Nicotiana tabacum, Nicotiana sylvestris, Nicotiana benthamiana, and Nicotiana tomentosiformis.
See this image and copyright information in PMC

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