Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2018 Apr 30;14(4):181-182.
doi: 10.6026/97320630014181. eCollection 2018.

LSAT: Liliaceae Simple Sequences Analysis Tool, a web server

Manosh Kumar Biswas  1 , Sathishkumar Natarajan  1 , Dhiman Biswas  2 , Ujjal Kumar Nath  1 , Jong-In Park  1 , Ill-Sup Nou  1
Affiliations

LSAT: Liliaceae Simple Sequences Analysis Tool, a web server

Manosh Kumar Biswas et al. Bioinformation. .

Abstract

LSAT is a web-based microsatellite SSR marker designer tool specific for the Liliaceae family. It is developed using HTML, CSS, PHP, Perl and Java scripts. It works without extra add-ons on standard browsers. LSAT provides SSR primer designing service using the web interface. It helps in SSR mining and primer design. LSAT is user friendly with customizable search parameters producing visual output having download options. The current version of LSAT is backed by two data sets, namely, lily EST (Expressed Sequence Tag) from NCBI and lily nr (non redundant) with 4,099 and 216,768 unigenes, respectively. LSAT will be updated regularly upon availability of additional data (either EST and/or transcriptome) on Liliaceae.

Availability: LSAT is available for free at http://210.110.86.160/Lsat/Lsat.html.

Keywords: Lily; SSR-marker; Web-Tool.

PubMed Disclaimer

Figures

Figure 1
Figure 1
An overview of LSAT database operational mode for SSR primers selection from the nr (non redundant) databases in the public domains. Description on the input and the output of LSAT with the data processing scripts and features for retrieving SSR for Liliaceae family is shown.
See this image and copyright information in PMC

References

    1. Biswas MK, et al. Genes. 2018;97:1 . - PubMed
    1. Beier S, et al. Bioinformatics. 2017;33:2583 . - PMC - PubMed
    1. Mudunuri SB, Nagarajaram HA. Bioinformatics. 2007;23:1181 . - PubMed
    1. Tarailo-Graovac M, Chen N. John Wiley & Sons Inc. 2004 - PubMed
    1. Kurtz S, Schleiermacher C. Bioinformatics. 1999;15:426 . - PubMed

LinkOut - more resources