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. 2018 Aug 9;9(1):3166.
doi: 10.1038/s41467-018-05427-7.

Identification of nine new susceptibility loci for endometrial cancer

Tracy A O'Mara  1 Dylan M Glubb  2 Frederic Amant  3 Daniela Annibali  3 Katie Ashton  4   5   6 John Attia  4   7 Paul L Auer  8   9 Matthias W Beckmann  10 Amanda Black  11 Manjeet K Bolla  12 Hiltrud Brauch  13   14   15 Hermann Brenner  15   16   17 Louise Brinton  11 Daniel D Buchanan  18   19   20   21 Barbara Burwinkel  22   23 Jenny Chang-Claude  24   25 Stephen J Chanock  11 Chu Chen  26 Maxine M Chen  27 Timothy H T Cheng  28 Christine L Clarke  29 Mark Clendenning  18   21 Linda S Cook  30   31 Fergus J Couch  32 Angela Cox  33 Marta Crous-Bous  27   34 Kamila Czene  35 Felix Day  36 Joe Dennis  12 Jeroen Depreeuw  3   37   38 Jennifer Anne Doherty  39 Thilo Dörk  40 Sean C Dowdy  41 Matthias Dürst  42 Arif B Ekici  43 Peter A Fasching  10   44 Brooke L Fridley  45 Christine M Friedenreich  31 Lin Fritschi  46 Jenny Fung  47 Montserrat García-Closas  11   48 Mia M Gaudet  49 Graham G Giles  19   50   51 Ellen L Goode  52 Maggie Gorman  28 Christopher A Haiman  53 Per Hall  35   54 Susan E Hankison  34   55 Catherine S Healey  56 Alexander Hein  10 Peter Hillemanns  40 Shirley Hodgson  57 Erling A Hoivik  58   59 Elizabeth G Holliday  4   7 John L Hopper  19 David J Hunter  27   60 Angela Jones  28 Camilla Krakstad  58   59 Vessela N Kristensen  61   62   63 Diether Lambrechts  38   64 Loic Le Marchand  65 Xiaolin Liang  66 Annika Lindblom  67 Jolanta Lissowska  68 Jirong Long  69 Lingeng Lu  70 Anthony M Magliocco  71 Lynn Martin  72 Mark McEvoy  7 Alfons Meindl  73 Kyriaki Michailidou  12   74 Roger L Milne  19   50 Miriam Mints  75 Grant W Montgomery  2   47 Rami Nassir  76 Håkan Olsson  77 Irene Orlow  66 Geoffrey Otton  78 Claire Palles  28 John R B Perry  36 Julian Peto  79 Loreall Pooler  53 Jennifer Prescott  34 Tony Proietto  78 Timothy R Rebbeck  80   81 Harvey A Risch  70 Peter A W Rogers  82 Matthias Rübner  83 Ingo Runnebaum  42 Carlotta Sacerdote  84   85 Gloria E Sarto  86 Fredrick Schumacher  87 Rodney J Scott  4   5   6   88 V Wendy Setiawan  53 Mitul Shah  56 Xin Sheng  53 Xiao-Ou Shu  69 Melissa C Southey  18   89 Anthony J Swerdlow  90   91 Emma Tham  67   92 Jone Trovik  58   59 Constance Turman  27 Jonathan P Tyrer  56 Celine Vachon  93 David VanDen Berg  53 Adriaan Vanderstichele  94 Zhaoming Wang  11 Penelope M Webb  95 Nicolas Wentzensen  11 Henrica M J Werner  58   59 Stacey J Winham  96 Alicja Wolk  97 Lucy Xia  53 Yong-Bing Xiang  98 Hannah P Yang  11 Herbert Yu  65 Wei Zheng  69 Paul D P Pharoah  12   56 Alison M Dunning  56 Peter Kraft  27   60 Immaculata De Vivo  27   34 Ian Tomlinson  28   72 Douglas F Easton  12   56 Amanda B Spurdle  99 Deborah J Thompson  100
Affiliations

Identification of nine new susceptibility loci for endometrial cancer

Tracy A O'Mara et al. Nat Commun. .

Abstract

Endometrial cancer is the most commonly diagnosed cancer of the female reproductive tract in developed countries. Through genome-wide association studies (GWAS), we have previously identified eight risk loci for endometrial cancer. Here, we present an expanded meta-analysis of 12,906 endometrial cancer cases and 108,979 controls (including new genotype data for 5624 cases) and identify nine novel genome-wide significant loci, including a locus on 12q24.12 previously identified by meta-GWAS of endometrial and colorectal cancer. At five loci, expression quantitative trait locus (eQTL) analyses identify candidate causal genes; risk alleles at two of these loci associate with decreased expression of genes, which encode negative regulators of oncogenic signal transduction proteins (SH2B3 (12q24.12) and NF1 (17q11.2)). In summary, this study has doubled the number of known endometrial cancer risk loci and revealed candidate causal genes for future study.

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Conflict of interest statement

The authors declare no competing interests.

Figures

Fig. 1
Fig. 1
Manhattan plot of the results of the endometrial cancer meta-analysis of 12,906 cases and 108,979 controls. Genetic variants are plotted according to chromosome and position (x axis) and statistical significance (y axis). The red line marks the 5 × 10−8 GWAS significance threshold. a Endometrial cancer (all histologies). b Endometrial cancer (all histologies) excluding variants within 500 kb of previously published endometrial cancer variants. c Endometrioid histology endometrial cancer excluding variants within 500 kb of previously published endometrial cancer variants. d Non-endometrioid histology endometrial cancer
Fig. 2
Fig. 2
Regional association plots for the nine novel endometrial cancer loci. –log10(p) from the fixed-effects meta-analysis is on the left y axis, recombination rate (cM/Mb) is on the right y axis (plotted as blue lines). The color of the circles shows the level of linkage disequilibrium between each variant and the most significantly associated variant (purple diamond) (r2 from the 1000 Genomes 2014 EUR reference panel—see key). Genes in the region are shown beneath each plot. a 1p34.3, b 2p16.1, c 9p21.3, d 11p13, e 12p12.1, f 12q24.11, g 12q24.21, h 17q11.2, i 17q21.32

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