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. 2018 Oct;56(10):748-752.
doi: 10.1007/s12275-018-8202-4. Epub 2018 Sep 28.

Lysobacter panacihumi sp. nov., isolated from ginseng cultivated soil

Yue Huo  1   2 , Jong-Pyo Kang  1 , Joon Hurh  3 , Yaxi Han  1 , Jong-Chan Ahn  3 , Ramya Mathiyalagan  3 , Chunhong Piao  2 , Deok-Chun Yang  4   5
Affiliations

Lysobacter panacihumi sp. nov., isolated from ginseng cultivated soil

Yue Huo et al. J Microbiol. 2018 Oct.

Abstract

A Gram-negative, non-motile, aerobic, catalase-, and oxidasepositive bacterial strain, designated DCY117T, was isolated from ginseng cultivated soil in Gochang-gun, Republic of Korea, and was characterized taxonomically using a multifaceted approach. 16S rRNA gene sequence analysis revealed that strain DCY117T showed highest similarity to Lysobacter ruishenii CTN-1T (95.3%). Phylogenetic analysis revealed that closely related relatives of strain DCY117T were L. aestuarii S2-CT (95.1%), L. daejeonensis GH1-9T (95.0%), and L. caeni BUT-8T (94.9%). Diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), and phosphatidylethanolamine (PE) were the major polar lipids of strain DCY117T. The major isoprenoid quinone was Q-8. The major cellular fatty acids of strain DCY117T were iso-C15:0, iso-C16:0, and summed feature 9 (comprising iso-C17:1ω9c and/or 10-methyl-C16:0). Genomic DNA G + C content was 61.8 mol%. On the basis of our findings, strain DCY117T is a novel species in the genus Lysobacter. We propose the name Lysobacter panacihumi sp. nov., and the type strain is DCY117T (= KCTC 62019T = JCM 32168T).

Keywords: 16S rRNA gene; Lysobacter panacihumi; ginseng cultivated soil.

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