How bioinformatics and open data can boost basic science in countries and universities with limited resources

Serghei Mangul^#^{1

2}, Lana S Martin^#³, Ben Langmead⁴, Javier E Sanchez-Galan⁵, Ian Toma⁶, Fereydoun Hormozdiari⁷, Pavel Pevzner⁸, Eleazar Eskin⁹

Affiliations

¹ Department of Computer Science, University of California, Los Angeles, Los Angeles, CA, USA. smangul@ucla.edu.
² Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, Los Angeles, CA, USA. smangul@ucla.edu.
³ Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, Los Angeles, CA, USA.
⁴ Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
⁵ Research Group in Biotechnology, Bioinformatics and Systems Biology, Agroindustrial Research and Production Center, Technological University of Panama, Panama City, Panama.
⁶ Department of Clinical Research and Leadership, George Washington School of Medicine and Health Sciences, Washington, DC, USA.
⁷ Department of Biochemistry and Molecular Medicine, School of Medicine, University of California, Davis, Davis, CA, USA.
⁸ Department of Computer Science, University of California, San Diego, La Jolla, CA, USA.
⁹ Department of Computer Science, University of California, Los Angeles, Los Angeles, CA, USA.

^# Contributed equally.

PMID: 30833765
DOI: 10.1038/s41587-019-0053-y

How bioinformatics and open data can boost basic science in countries and universities with limited resources

Serghei Mangul et al. Nat Biotechnol. 2019 Mar.

. 2019 Mar;37(3):324-326.

doi: 10.1038/s41587-019-0053-y.

Authors

Serghei Mangul^#^{1

2}, Lana S Martin^#³, Ben Langmead⁴, Javier E Sanchez-Galan⁵, Ian Toma⁶, Fereydoun Hormozdiari⁷, Pavel Pevzner⁸, Eleazar Eskin⁹

Affiliations

¹ Department of Computer Science, University of California, Los Angeles, Los Angeles, CA, USA. smangul@ucla.edu.
² Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, Los Angeles, CA, USA. smangul@ucla.edu.
³ Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, Los Angeles, CA, USA.
⁴ Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
⁵ Research Group in Biotechnology, Bioinformatics and Systems Biology, Agroindustrial Research and Production Center, Technological University of Panama, Panama City, Panama.
⁶ Department of Clinical Research and Leadership, George Washington School of Medicine and Health Sciences, Washington, DC, USA.
⁷ Department of Biochemistry and Molecular Medicine, School of Medicine, University of California, Davis, Davis, CA, USA.
⁸ Department of Computer Science, University of California, San Diego, La Jolla, CA, USA.
⁹ Department of Computer Science, University of California, Los Angeles, Los Angeles, CA, USA.

^# Contributed equally.

PMID: 30833765
DOI: 10.1038/s41587-019-0053-y

No abstract available

PubMed Disclaimer

Cited by

Promising Potential of Lonchocarpus utilis against South American Myasis.
Luzuriaga-Quichimbo CX, Blanco-Salas J, Cerón-Martínez CE, Alías-Gallego JC, Ruiz-Téllez T. Luzuriaga-Quichimbo CX, et al. Plants (Basel). 2019 Dec 25;9(1):33. doi: 10.3390/plants9010033. Plants (Basel). 2019. PMID: 31881648 Free PMC article.
Recommendations to enhance rigor and reproducibility in biomedical research.
Brito JJ, Li J, Moore JH, Greene CS, Nogoy NA, Garmire LX, Mangul S. Brito JJ, et al. Gigascience. 2020 Jun 1;9(6):giaa056. doi: 10.1093/gigascience/giaa056. Gigascience. 2020. PMID: 32479592 Free PMC article.
Ten simple rules for developing bioinformatics capacity at an academic institution.
Aron S, Jongeneel CV, Chauke PA, Chaouch M, Kumuthini J, Zass L, Radouani F, Kassim SK, Fadlelmola FM, Mulder N. Aron S, et al. PLoS Comput Biol. 2021 Dec 9;17(12):e1009592. doi: 10.1371/journal.pcbi.1009592. eCollection 2021 Dec. PLoS Comput Biol. 2021. PMID: 34882684 Free PMC article. No abstract available.
Awareness and Predictors of the Use of Bioinformatics in Genome Research in Saudi Arabia.
Alomair L, Abolfotouh MA. Alomair L, et al. Int J Gen Med. 2023 Aug 11;16:3413-3425. doi: 10.2147/IJGM.S421815. eCollection 2023. Int J Gen Med. 2023. PMID: 37587979 Free PMC article.
MiR-16-5p regulates postmenopausal osteoporosis by directly targeting VEGFA.
Yu T, You X, Zhou H, He W, Li Z, Li B, Xia J, Zhu H, Zhao Y, Yu G, Xiong Y, Yang Y. Yu T, et al. Aging (Albany NY). 2020 May 19;12(10):9500-9514. doi: 10.18632/aging.103223. Epub 2020 May 19. Aging (Albany NY). 2020. PMID: 32427128 Free PMC article.

See all "Cited by" articles

References

1. Organisation for Economic Co-operation and Development. Gross national income (indicator). https://data.oecd.org/natincome/gross-national-income.htm (accessed 5 February 2019).
1. May, M. & Brody, H. Nature 522, S1 (2015). - DOI
1. Rochmyaningsih, D. Nature 542, 7 (2017). - DOI
1. Anonymous. Nature 547, 137 (2017).
1. Longo, D. L. & Drazen, J. M. N. Engl. J. Med. 374, 276–277 (2016). - DOI

Publication types

Actions
Actions

MeSH terms

Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions

LinkOut - more resources

Full Text Sources
- Nature Publishing Group

Save citation to file

Email citation

Add to Collections

Add to My Bibliography

Your saved search

Create a file for external citation management software

Your RSS Feed

How bioinformatics and open data can boost basic science in countries and universities with limited resources

Affiliations

How bioinformatics and open data can boost basic science in countries and universities with limited resources

Authors

Affiliations

Similar articles

Cited by

References

Publication types

MeSH terms

LinkOut - more resources

Full Text Sources