Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2019:2008:73-81.
doi: 10.1007/978-1-4939-9537-0_6.

Antibody-Driven Proximity Labeling in Fixed Tissues

Affiliations

Antibody-Driven Proximity Labeling in Fixed Tissues

Daniel Z Bar et al. Methods Mol Biol. 2019.

Abstract

Protein function often depends on assemblies and interactions. These show complex spatial and temporal organization within the cell. Analysis of protein function can be greatly assisted by grouping proteins with their neighbors. Rather than relying on affinity, proximity labeling targets proteins proximal to the target of interest. We describe a protocol for antibody-guided deposition of tags in fixed and permeabilized cell lines and primary human tissue samples.

Keywords: Antibody; Biotin; HRP; Mass-spectrometry; Protein-protein interactions; Proximity labeling.

PubMed Disclaimer

Figures

Fig. 1
Fig. 1
Outline of the antibody-driven proximity labeling method

References

    1. Kotani N, Gu J, Isaji T, Udaka K, Taniguchi N, Honke K (2008) Biochemical visualization of cell surface molecular clustering in living cells. Proc Natl Acad Sci U S A 105(21):7405–7409. 10.1073/pnas.0710346105 - DOI - PMC - PubMed
    1. Honke K, Kotani N (2012) Identification of cell-surface molecular interactions under living conditions by using the enzyme-mediated activation of radical sources (EMARS) method. Sensors 12(12):16037–16045. 10.3390/s121216037 - DOI - PMC - PubMed
    1. Roux KJ, Kim DI, Raida M, Burke B (2012) A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells. J Cell Biol 196(6):801–810. 10.1083/jcb.201112098 - DOI - PMC - PubMed
    1. Li XW, Rees JS, Xue P, Zhang H, Hamaia SW, Sanderson B, Funk PE, Farndale RW, Lilley KS, Perrett S, Jackson AP (2014) New insights into the DT40 B cell receptor cluster using a proteomic proximity labeling assay. J Biol Chem 289(21):14434–14447. 10.1074/jbc.M113.529578 - DOI - PMC - PubMed
    1. Chen Y, Zhang Y, Wang Y, Zhang L, Brinkman EK, Adam SA, Goldman R, van Steensel B, Ma J, Belmont AS (2018) Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler. J Cell Biol 217(11):4025–4048. 10.1083/jcb.201807108 - DOI - PMC - PubMed

Publication types

LinkOut - more resources