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Review
. 2019 Jul 13;16(2):20190035.
doi: 10.1515/jib-2019-0035.

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

Falk Schreiber  1   2 , Björn Sommer  1 , Gary D Bader  3 , Padraig Gleeson  4 , Martin Golebiewski  5 , Michael Hucka  6 , Sarah M Keating  7 , Matthias König  8 , Chris Myers  9 , David Nickerson  10 , Dagmar Waltemath  11
Affiliations
Review

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

Falk Schreiber et al. J Integr Bioinform. .

Abstract

This special issue of the Journal of Integrative Bioinformatics presents an overview of COMBINE standards and their latest specifications. The standards cover representation formats for computational modeling in synthetic and systems biology and include BioPAX, CellML, NeuroML, SBML, SBGN, SBOL and SED-ML. The articles in this issue contain updated specifications of SBGN Process Description Level 1 Version 2, SBML Level 3 Core Version 2 Release 2, SBOL Version 2.3.0, and SBOL Visual Version 2.1.

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Figures

Figure 1:
Figure 1:
Overview of standards and associated efforts in Systems and Synthetic Biology provided by COMBINE (from [6]).
See this image and copyright information in PMC

References

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    2. Hucka M, Nickerson D P, Bader GD, Bergmann FT, Cooper J, Demir E. et al. Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative. Front Bioeng Biotechnol. 2015;3:19. - PMC - PubMed
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    1. Schreiber F, Bader GD, Golebiewski M, Gleeson P, Hucka M, Keating SM, et al. Specifications of standards in systems and synthetic biology. J Integr Bioinform 2015;12:258. - PMC - PubMed
    2. Schreiber F, Bader GD, Golebiewski M, Gleeson P, Hucka M, Keating SM. et al. Specifications of standards in systems and synthetic biology. J Integr Bioinform. 2015;12:258. - PMC - PubMed

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