Reply to 'Inflated performance measures in enhancer-promoter interaction-prediction methods'

Sean Whalen¹, Katherine S Pollard^{2

3

4}

Affiliations

¹ Gladstone Institutes, San Francisco, CA, USA.
² Gladstone Institutes, San Francisco, CA, USA. kpollard@gladstone.ucsf.edu.
³ Department of Epidemiology and Biostatistics, Institute for Human Genetics, Quantitative Biology Institute, and Institute for Computational Health Sciences, University of California, San Francisco, San Francisco, CA, USA. kpollard@gladstone.ucsf.edu.
⁴ Chan-Zuckerberg Biohub, San Francisco, CA, USA. kpollard@gladstone.ucsf.edu.

Comment

Sean Whalen et al. Nat Genet. 2019 Aug.

. 2019 Aug;51(8):1198-1200.

doi: 10.1038/s41588-019-0473-0.

Sean Whalen¹, Katherine S Pollard^{2

3

4}

¹ Gladstone Institutes, San Francisco, CA, USA.
² Gladstone Institutes, San Francisco, CA, USA. kpollard@gladstone.ucsf.edu.
³ Department of Epidemiology and Biostatistics, Institute for Human Genetics, Quantitative Biology Institute, and Institute for Computational Health Sciences, University of California, San Francisco, San Francisco, CA, USA. kpollard@gladstone.ucsf.edu.
⁴ Chan-Zuckerberg Biohub, San Francisco, CA, USA. kpollard@gladstone.ucsf.edu.

No abstract available

Comment on

Enhancer-promoter interactions are encoded by complex genomic signatures on looping chromatin.
Whalen S, Truty RM, Pollard KS. Whalen S, et al. Nat Genet. 2016 May;48(5):488-96. doi: 10.1038/ng.3539. Epub 2016 Apr 4. Nat Genet. 2016. PMID: 27064255 Free PMC article.
Inflated performance measures in enhancer-promoter interaction-prediction methods.
Cao F, Fullwood MJ. Cao F, et al. Nat Genet. 2019 Aug;51(8):1196-1198. doi: 10.1038/s41588-019-0434-7. Nat Genet. 2019. PMID: 31332378 No abstract available.