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. 2019 Jul 25;8(30):e00503-19.
doi: 10.1128/MRA.00503-19.

Transcriptomic Analysis of Mucor irregularis Containing a Negative Single-Stranded RNA Mycovirus

Rafael R Barata  1 , João L S G Vianez-Júnior  2 , Márcio R T Nunes  2
Affiliations

Transcriptomic Analysis of Mucor irregularis Containing a Negative Single-Stranded RNA Mycovirus

Rafael R Barata et al. Microbiol Resour Announc. .

Abstract

The fungus Mucor irregularis is a causative agent of mucormycosis. The transcriptome analysis of the isolated M. irregularis strain C3B revealed the presence of an RNA polymerase domain of a negative-polarity RNA virus. In this work, we describe the gene ontology-based annotation of the Mucor irregularis transcriptome, which includes a putative RNA mycovirus.

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References

    1. Lu X, Liu Z, Shen Y, She X, Lu G, Zhan P, Fu M, Zhang X, Ge Y, Liu W. 2009. Primary cutaneous zygomycosis caused by Rhizomucor variabilis: a new endemic zygomycosis? A case report and review of 6 cases reported from China. Clin Infect Dis 49:e39–e43. doi:10.1086/600817. - DOI - PubMed
    1. Zhao Y, Zhang Q, Li L, Zhu J, Kang K, Chen L. 2009. Primary cutaneous mucormycosis caused by Rhizomucor variabilis in an immunocompetent patient. Mycopathologia 168:243–247. doi:10.1007/s11046-009-9219-3. - DOI - PubMed
    1. Martin M. 2011. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J 17:10–12. doi:10.14806/ej.17.1.200. - DOI
    1. Kopylova E, Noé L, Touzet H. 2012. SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data. Bioinformatics 28:3211–3217. doi:10.1093/bioinformatics/bts611. - DOI - PubMed
    1. Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, di Palma F, Birren BW, Nusbaum C, Lindblad-Toh K, Friedman N, Regev A. 2011. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29:644–652. doi:10.1038/nbt.1883. - DOI - PMC - PubMed

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