Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2019 Aug 28;5(8):1312-1314.
doi: 10.1021/acscentsci.9b00791. Epub 2019 Aug 15.

Predicting Resistance Is (Not) Futile

Affiliations

Predicting Resistance Is (Not) Futile

Alice E Brankin et al. ACS Cent Sci. .
No abstract available

PubMed Disclaimer

Figures

Figure 1
Figure 1
(A) Tyrosine kinase inhibitors (TKI) bind the human Abl kinase. (B) Resistance to TKIs arise from missense mutations in Abl. (C) Effect of a mutation can be predicted by calculating how it affects the binding free energy of the TKI. (D) There are a range of methods to calculate how a protein mutation alters the binding free energy of a drug; here, we categorize them based on whether they are physics-based or data-driven.

References

    1. Aldeghi M.; Gapsys V.; de Groot B. L.. Predicting Kinase Inhibitor Resistance: Physics-Based and Data-Driven Approaches. ACS Cent. Sci. [Online early access]. 10.1021/acscentsci.9b00590. - DOI - PMC - PubMed
    1. Zehir A.; Benayed R.; Shah R. H.; Syed A.; Middha S.; Kim H. R.; Srinivasan P.; Gao J.; Chakravarty D.; Devlin S. M.; Hellmann M. D.; Barron D. A.; Schram A. M.; Hameed M.; Dogan S.; Ross D. S.; Hechtman J. F.; DeLair D. F.; Yao J. J.; Mandelker D. L.; Cheng D. T.; Chandramohan R.; Mohanty A. S.; Ptashkin R. N.; Jayakumaran G.; Prasad M.; Syed M. H.; Rema A. B.; Liu Z. Y.; Nafa K.; Borsu L.; Sadowska J.; Casanova J.; Bacares R.; Kiecka I. J.; Razumova A.; Son J. B.; Stewart L.; Baldi T.; Mullaney K. A.; Al-Ahmadie H.; Vakiani E.; Abeshouse A. A.; Penson A. V.; Jonsson P.; Camacho N.; Chang M. T.; Won H. H.; Gross B. E.; Kundra R.; Heins Z. J.; Chen H. W.; Phillips S.; Zhang H.; Wang J.; Ochoa A.; Wills J.; Eubank M.; Thomas S. B.; Gardos S. M.; Reales D. N.; Galle J.; Durany R.; Cambria R.; Abida W.; Cercek A.; Feldman D. R.; Gounder M. M.; Hakimi A. A.; Harding J. J.; Iyer G.; Janjigian Y. Y.; Jordan E. J.; Kelly C. M.; Lowery M. A.; Morris L. G. T.; Omuro A. M.; Raj N.; Razavi P.; Shoushtari A. N.; Shukla N.; Soumerai T. E.; Varghese A. M.; Yaeger R.; Coleman J.; Bochner B.; Riely G. J.; Saltz L. B.; Scher H. I.; Sabbatini P. J.; Robson M. E.; Klimstra D. S.; Taylor B. S.; Baselga J.; Schultz N.; Hyman D. M.; Arcila M. E.; Solit D. B.; Ladanyi M.; Berger M. F. Mutational Landscape of Metastatic Cancer Revealed from Prospective Clinical Sequencing of 10,000 Patients. Nat. Med. 2017, 23 (6), 703–713. 10.1038/nm.4333. - DOI - PMC - PubMed
    1. Barlow K. A.; Ó Conchúir S.; Thompson S.; Suresh P.; Lucas J. E.; Heinonen M.; Kortemme T. Flex ddG: Rosetta Ensemble-Based Estimation of Changes in Protein–Protein Binding Affinity upon Mutation. J. Phys. Chem. B 2018, 122 (21), 5389–5399. 10.1021/acs.jpcb.7b11367. - DOI - PMC - PubMed
    1. Hauser K.; Negron C.; Albanese S. K.; Ray S.; Steinbrecher T.; Abel R.; Chodera J. D.; Wang L. Predicting Resistance of Clinical Abl Mutations to Targeted Kinase Inhibitors Using Alchemical Free-Energy Calculations. Commun. Biol. 2018, 1 (1), 1–14. 10.1038/s42003-018-0075-x. - DOI - PMC - PubMed
    1. Fowler P. W.; Cole K.; Gordon N. C.; Kearns A. M.; Llewelyn M. J.; Peto T. E. A.; Crook D. W.; Walker A. S. Robust Prediction of Resistance to Trimethoprim in Staphylococcus aureus. Cell Chem. Biol. 2018, 25 (3), 339–349. 10.1016/j.chembiol.2017.12.009. - DOI - PubMed