Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2020 Jan 8;48(D1):D70-D76.
doi: 10.1093/nar/gkz1063.

The European Nucleotide Archive in 2019

Affiliations

The European Nucleotide Archive in 2019

Clara Amid et al. Nucleic Acids Res. .

Abstract

The European Nucleotide Archive (ENA, https://www.ebi.ac.uk/ena) at the European Molecular Biology Laboratory's European Bioinformatics Institute provides open and freely available data deposition and access services across the spectrum of nucleotide sequence data types. Making the world's public sequencing datasets available to the scientific community, the ENA represents a globally comprehensive nucleotide sequence resource. Here, we outline ENA services and content in 2019 and provide an insight into selected key areas of development in this period.

PubMed Disclaimer

Figures

Figure 1.
Figure 1.
Data growth of total content, by assembled/annotated sequences and reads.
Figure 2.
Figure 2.
Cumulative number of assemblies submitted to ENA classed by type.
Figure 3.
Figure 3.
The new ENA Browser, showing its streamlined landing page.
Figure 4.
Figure 4.
Advanced search query interface for constructing complex searches, for example geographical boundaries.
Figure 5.
Figure 5.
Rulespace interface for managing saved user advanced queries.

References

    1. Karsch-Mizrachi I., Takagi T., Cochrane G.. The International Nucleotide Sequence Database Collaboration. Nucleic Acids Res. 2018; 46:D48–D51. - PMC - PubMed
    1. Wilkinson M.D., Dumontier M., Aalbersberg I.J., Appleton G., Axton M., Baak A., Blomberg N., Boiten J.-W., da Silva Santos L.B., Bourne P.E. et al. .. The FAIR Guiding Principles for scientific data management and stewardship. Sci. Data. 2016; 3:160018. - PMC - PubMed
    1. Harrison P.W., Alako B., Amid C., Cerdeño-Tárraga A., Cleland I., Holt S., Hussein A., Jayathilaka S., Kay S., Keane T. et al. .. The European Nucleotide Archive in 2018. Nucleic Acids Res. 2019; 47:D84–D88. - PMC - PubMed
    1. Bowers R.M., Kyrpides N.C., Stepanauskas R., Harmon-Smith M., Doud D., Reddy T.B.K., Schulz F., Jarett J., Rivers A.R., Eloe-Fadrosh E.A. et al. .. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat. Biotechnol. 2017; 35:725–731. - PMC - PubMed
    1. Yilmaz P., Parfrey L.W., Yarza P., Gerken J., Pruesse E., Quast C., Schweer T., Peplies J., Ludwig W., Glöckner F.O.. The SILVA and “All-Species Living Tree Project (LTP)” taxonomic frameworks. Nucleic Acids Res. 2014; 42:D643–D648. - PMC - PubMed

Publication types