Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2020:2062:291-325.
doi: 10.1007/978-1-4939-9822-7_15.

Affinity Proteomic Analysis of the Human Exosome and Its Cofactor Complexes

Affiliations

Affinity Proteomic Analysis of the Human Exosome and Its Cofactor Complexes

Kinga Winczura et al. Methods Mol Biol. 2020.

Erratum in

Abstract

In humans, the RNA exosome consists of an enzymatically inactive nine-subunit core, with ribonucleolytic activity contributed by additional components. Several cofactor complexes also interact with the exosome-these enable the recruitment of, and specify the activity upon, diverse substrates. Affinity capture coupled with mass spectrometry has proven to be an effective means to identify the compositions of RNA exosomes and their cofactor complexes: here, we describe a general experimental strategy for proteomic characterization of macromolecular complexes, applied to the exosome and an affiliated adapter protein, ZC3H18.

Keywords: Affinity capture; Affinity proteomics; Cofactors; Exosome; Mass spectrometry.

PubMed Disclaimer

References

    1. Mitchell P, Petfalski E, Shevchenko A, Mann M, Tollervey D (1997) The exosome: a conserved eukaryotic RNA processing complex containing multiple 3′-->5′ exoribonucleases. Cell 91(4):457–466 - PubMed - DOI
    1. Koonin EV, Wolf YI, Aravind L (2001) Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach. Genome Res 11(2):240–252 - PubMed - PMC - DOI
    1. Kilchert C, Wittmann S, Vasiljeva L (2016) The regulation and functions of the nuclear RNA exosome complex. Nat Rev Mol Cell Biol 17(4):227–239 - PubMed - DOI
    1. Zinder JC, Lima CD (2017) Targeting RNA for processing or destruction by the eukaryotic RNA exosome and its cofactors. Genes Dev 31(2):88–100 - PubMed - PMC - DOI
    1. Ogami K, Chen Y, Manley JL (2018) RNA surveillance by the nuclear RNA exosome: mechanisms and significance. Noncoding RNA 4(1)

Publication types

LinkOut - more resources