The emergence of microbiome centres

Jennifer B H Martiny¹, Katrine L Whiteson², Brendan J M Bohannan^{3

4}, Lawrence A David^{5

6}, Nicole A Hynson⁷, Margaret McFall-Ngai⁷, John F Rawls^{5

8}, Thomas M Schmidt⁹, Zaid Abdo¹⁰, Martin J Blaser¹¹, Seth Bordenstein^{12

13}, Christian Bréchot¹⁴, Carolee T Bull¹⁵, Pieter Dorrestein^{16

17}, Jonathan A Eisen^{18

19}, Ferran Garcia-Pichel²⁰, Jack Gilbert^{17

21}, Kirsten S Hofmockel²², Mary L Holtz^{23

24}, Rob Knight^{17

25

26}, David B Mark Welch²⁷, Daniel McDonald¹⁷, Barbara Methé²⁸, Nigel J Mouncey²⁹, Noel T Mueller³⁰, Catherine A Pfister³¹, Lita Proctor³², Joel L Sachs³³

Affiliations

¹ Department of Ecology and Evolutionary Biology, University of California, Irvine, CA, USA. jmartiny@uci.edu.
² Department of Molecular Biology and Biochemistry, University of California, Irvine, CA, USA.
³ Department of Environmental Studies, University of Oregon, Eugene, OR, USA.
⁴ Department of Biology, University of Oregon, Eugene, OR, USA.
⁵ Department of Molecular Genetics and Microbiology, Duke University, Durham, NC, USA.
⁶ Center for Genomics and Computational Biology, Duke University, Durham, NC, USA.
⁷ Pacific Biosciences Research Center, University of Hawaii at Manoa, Honolulu, HI, USA.
⁸ Duke Microbiome Center, Duke University, Durham, NC, USA.
⁹ Michigan Microbiome Project, University of Michigan, Ann Arbor, MI, USA.
¹⁰ Department of Microbiology, Immunology and Pathology, College of Veterinary Medicine and Biomedical Sciences, Colorado State University, Fort Collins, CO, USA.
¹¹ Rutgers University Microbiome Program, Center for Advanced Biotechnology and Medicine, Rutgers University, New Brunswick, NJ, USA.
¹² Department of Biological Sciences, Vanderbilt University, Nashville, TN, USA.
¹³ Department of Pathology, Microbiology and Immunology, Vanderbilt University, Nashville, TN, USA.
¹⁴ Department of Internal Medicine, Division of Infectious Disease & International Medicine, University of South Florida, Tampa, FL, USA.
¹⁵ Department of Plant Pathology and Environmental Microbiology, The Pennsylvania State University, University Park, PA, USA.
¹⁶ Skaggs School of Pharmacy, University of California, San Diego, CA, USA.
¹⁷ Department of Pediatrics, University of California, San Diego, CA, USA.
¹⁸ Department of Evolution and Ecology, University of California, Davis, CA, USA.
¹⁹ Department of Medical Microbiology and Immunology, University of California, Davis, CA, USA.
²⁰ Center for Fundamental and Applied Microbiomics, Biodesign Institute, School of Life Sciences, Arizona State University, Tempe, AZ, USA.
²¹ Department of Marine Biology, University of California, San Diego, CA, USA.
²² Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.
²³ Center for Microbiome Research, The Medical College of Wisconsin, Milwaukee, WI, USA.
²⁴ Department of Pediatrics, Division of Gastroenterology, The Medical College of Wisconsin, Milwaukee, WI, USA.
²⁵ Department of Bioengineering, University of California, San Diego, CA, USA.
²⁶ Department of Computer Science & Engineering, Universityof California, San Diego, CA, USA.
²⁷ Marine Biological Laboratory, The University of Chicago, Woods Hole, MA, USA.
²⁸ Department of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
²⁹ DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
³⁰ Johns Hopkins Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA.
³¹ Department of Ecology & Evolution, University of Chicago, Chicago, IL, USA.
³² Former Human Microbiome Project (HMP) Coordinator at the National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, USA.
³³ Department of Evolution, Ecology & Organismal Biology, University of California, Riverside, CA, USA.

PMID: 31857734
DOI: 10.1038/s41564-019-0644-x

Free article

The emergence of microbiome centres

Jennifer B H Martiny et al. Nat Microbiol. 2020 Jan.

Free article

. 2020 Jan;5(1):2-3.

doi: 10.1038/s41564-019-0644-x.

Authors

Affiliations

¹ Department of Ecology and Evolutionary Biology, University of California, Irvine, CA, USA. jmartiny@uci.edu.
² Department of Molecular Biology and Biochemistry, University of California, Irvine, CA, USA.
³ Department of Environmental Studies, University of Oregon, Eugene, OR, USA.
⁴ Department of Biology, University of Oregon, Eugene, OR, USA.
⁵ Department of Molecular Genetics and Microbiology, Duke University, Durham, NC, USA.
⁶ Center for Genomics and Computational Biology, Duke University, Durham, NC, USA.
⁷ Pacific Biosciences Research Center, University of Hawaii at Manoa, Honolulu, HI, USA.
⁸ Duke Microbiome Center, Duke University, Durham, NC, USA.
⁹ Michigan Microbiome Project, University of Michigan, Ann Arbor, MI, USA.
¹⁰ Department of Microbiology, Immunology and Pathology, College of Veterinary Medicine and Biomedical Sciences, Colorado State University, Fort Collins, CO, USA.
¹¹ Rutgers University Microbiome Program, Center for Advanced Biotechnology and Medicine, Rutgers University, New Brunswick, NJ, USA.
¹² Department of Biological Sciences, Vanderbilt University, Nashville, TN, USA.
¹³ Department of Pathology, Microbiology and Immunology, Vanderbilt University, Nashville, TN, USA.
¹⁴ Department of Internal Medicine, Division of Infectious Disease & International Medicine, University of South Florida, Tampa, FL, USA.
¹⁵ Department of Plant Pathology and Environmental Microbiology, The Pennsylvania State University, University Park, PA, USA.
¹⁶ Skaggs School of Pharmacy, University of California, San Diego, CA, USA.
¹⁷ Department of Pediatrics, University of California, San Diego, CA, USA.
¹⁸ Department of Evolution and Ecology, University of California, Davis, CA, USA.
¹⁹ Department of Medical Microbiology and Immunology, University of California, Davis, CA, USA.
²⁰ Center for Fundamental and Applied Microbiomics, Biodesign Institute, School of Life Sciences, Arizona State University, Tempe, AZ, USA.
²¹ Department of Marine Biology, University of California, San Diego, CA, USA.
²² Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.
²³ Center for Microbiome Research, The Medical College of Wisconsin, Milwaukee, WI, USA.
²⁴ Department of Pediatrics, Division of Gastroenterology, The Medical College of Wisconsin, Milwaukee, WI, USA.
²⁵ Department of Bioengineering, University of California, San Diego, CA, USA.
²⁶ Department of Computer Science & Engineering, Universityof California, San Diego, CA, USA.
²⁷ Marine Biological Laboratory, The University of Chicago, Woods Hole, MA, USA.
²⁸ Department of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
²⁹ DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
³⁰ Johns Hopkins Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA.
³¹ Department of Ecology & Evolution, University of Chicago, Chicago, IL, USA.
³² Former Human Microbiome Project (HMP) Coordinator at the National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, USA.
³³ Department of Evolution, Ecology & Organismal Biology, University of California, Riverside, CA, USA.

PMID: 31857734
DOI: 10.1038/s41564-019-0644-x

No abstract available

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References

1. Alivisatos, A. P. et al. Science 350, 507–508 (2015). - DOI
1. Stulberg, E. et al. Nat. Microbiol. 1, 15015 (2016). - DOI
1. Dubilier, N., McFall-Ngai, M. & Zhao, L. Nature 526, 631–634 (2015). - DOI

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The emergence of microbiome centres

Affiliations

The emergence of microbiome centres

Authors

Affiliations

References

MeSH terms

Grants and funding

LinkOut - more resources

Full Text Sources