Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2020 Mar 18;142(11):5117-5125.
doi: 10.1021/jacs.9b12320. Epub 2020 Mar 9.

Iridium(I)-Catalyzed α-C(sp3)-H Alkylation of Saturated Azacycles

Affiliations

Iridium(I)-Catalyzed α-C(sp3)-H Alkylation of Saturated Azacycles

Pritha Verma et al. J Am Chem Soc. .

Abstract

Saturated azacycles are commonly encountered in bioactive compounds and approved therapeutic agents. The development of methods for functionalization of the α-methylene C-H bonds of these highly privileged building blocks is of great importance, especially in drug discovery. While much effort has been dedicated toward this goal by using a directed C-H activation approach, the development of directing groups that are both general as well as practical remains a significant challenge. Herein, the design and development of novel amidoxime directing groups is described for Ir(I)-catalyzed α-C(sp3)-H alkylation of saturated azacycles using readily available olefins as coupling partners. This protocol extends the scope of saturated azacycles to piperidines, azepane, and tetrahydroisoquinoline that are incompatible with our previously reported directing group. A variety of olefin coupling partners, including previously unreactive disubstituted terminal olefins and internal olefins, are compatible with this transformation. The selectivity for a branched α-C(sp3)-alkylation product is also observed for the first time when acrylate is used as the reaction partner. The development of practical, one-step installation and removal protocols further adds to the utility of amidoxime directing groups.

PubMed Disclaimer

Conflict of interest statement

The authors declare no competing financial interests.

Figures

Figure 1.
Figure 1.
Some biologically significant compounds containing α-alkylated saturated azacycles.
Scheme 1.
Scheme 1.
Palladium(II)-and Iridium(I)-catalyzed Directed α-C(sp3)‒H Activation Reactions of Saturated Azacycles. DG = Directing Group.
Scheme 2.
Scheme 2.
Evolution of Directing Groups for Transition-metal-catalyzed α-C(sp3)‒H Alkylation of Amines with Olefin Coupling Partners.
Scheme 3.
Scheme 3.
Design Principles of Amidoxime Directing Groups.
Scheme 4.
Scheme 4.
Evaluation of the Trifluoromethyl O-Benzyl Amidoxime Directing Group for α-C(sp3)‒H Alkylation of Azetidine, Piperidine, and Azepane. aYield was determined by 1H NMR analysis of the crude product using mesitylene as the internal standard. bYield after isolation by chromatography is shown.
Scheme 5.
Scheme 5.
Installation and Removal of Amidoxime Directing Groups.a aReaction conditions: (a) Azacycle (1.0 equiv), 6 (1.2 equiv), triethylamine (1.2 equiv), DCM, 50 °C, under air, 12 h. (b) Azacycle (1.0 equiv), 7 (1.2 equiv), DMF, 70 °C, under air, 12 h. (c) 2k or 5h (0.1 mmol, 1.0 equiv), DIBAL-H (0.5 mmol, 5.0 equiv), toluene (0.5 mL), 0 °C, under N2, 30 min. (d) CbzCl (0.3 mmol, 3.0 equiv), Et3N (0.3 mmol, 3.0 equiv), DCM (1.0 mL), rt, under N2, 12 h.
Scheme 6.
Scheme 6.
Deuterium labelling experiments.
Scheme 7.
Scheme 7.
Proposed Mechanistic Pathways.

References

    1. Taylor RD; MacCoss M; Lawson ADG Rings in Drugs. J. Med. Chem 2014, 57, 5845. - PubMed
    2. Vitaku E; Smith DT; Njardarson JT Analysis of the Structural Diversity, Substitution Patterns, and Frequency of Nitrogen Heterocycles among U.S. FDA Approved Pharmaceuticals. J. Med. Chem 2014, 57, 10257. - PubMed
    1. Lovering F; Bikker J; Humblet C Escape from Flatland: Increasing Saturation as an Approach to Improving Clinical Success. J. Med. Chem 2009, 52, 6752. - PubMed
    2. Murray CW; Rees DC Opportunity Knocks: Organic Chemistry for Fragment-Based Drug Discovery (FBDD). Angew. Chem. Int. Ed 2016, 55, 488. - PubMed
    3. Blakemore DC; Castro L; Churcher I; Rees DC; Thomas AW; Wilson DM; Wood A Organic Synthesis Provides Opportunities to Transform Drug Discovery. Nat. Chem 2018, 10, 383. - PubMed
    1. Campos KR Direct sp3 C–H Bond Activation Adjacent to Nitrogen in Heterocycles. Chem. Soc. Rev 2007, 36, 1069. - PubMed
    2. Mitchell EA; Peschiulli A; Lefevre N; Meerpoel L; Maes BUW Direct α-Functionalization of Saturated Cyclic Amines. Chem. Eur. J 2012, 18, 10092. - PubMed
    1. Jovel I; Prateeptongkum S; Jackstell R; Vogl N; Weckbecker C; Beller M α-Functionalization of Non-activated Aliphatic Amines: Ruthenium-catalyzed Alkynylations and Alkylations. Chem. Commun 2010, 46, 1956. - PubMed
    2. Dai C; Meschini F; Narayanam JMR; Stephenson CRJ Friedel–Crafts Amidoalkylation via Thermolysis and Oxidative Photocatalysis. J. Org. Chem 2012, 77, 4425. - PMC - PubMed
    3. Girard SA; Knauber T; Li C-J The Cross-Dehydrogenative Coupling of C–H Bonds: A Versatile Strategy for C–C Bond Formations. Angew. Chem. Int. Ed 2014, 53, 74. - PubMed
    4. Seidel D The Azomethine Ylide Route to Amine C–H Functionalization: Redox-Versions of Classic Reactions and a Pathway to New Transformations. Acc. Chem. Res 2015, 48, 317. - PMC - PubMed
    5. Shang M; Chan JZ; Cao M; Chang Y; Wang Q; Cook B; Torker S; Wasa M C–H Functionalization of Amines via Alkene-Derived Nucleophiles through Cooperative Action of Chiral and Achiral Lewis Acid Catalysts: Applications in Enantioselective Synthesis. J. Am. Chem. Soc 2018, 140, 10593. - PMC - PubMed
    1. Meyers AI; Edwards PD; Rieker WF; Bailey TR Alpha-amino Carbanions via Formamidines. Alkylation of Pyrrolidines, Piperidines, and Related Heterocycles. J. Am. Chem. Soc 1984, 106, 3270.
    2. Beak P; Kerrick ST; Wu S; Chu J Complex Induced Proximity Effects: Enantioselective Syntheses Based on Asymmetric Deprotonations of N-Boc-pyrrolidines. J. Am. Chem. Soc 1994, 116, 3231.
    3. Campos KR; Klapars A; Waldman JH; Dormer PG; Chen C-Y Enantioselective, Palladium-Catalyzed α-Arylation of N-Bocpyrrolidine. J. Am. Chem. Soc 2006, 128, 3538. - PubMed
    4. Beng TK; Gawley RE Highly Enantioselective Catalytic Dynamic Resolution of N-Boc-2-lithiopiperidine: Synthesis of (R)-(+)-N-Boc-Pipecolic Acid, (S)-(−)-Coniine, (S)-(+)-Pelletierine, (+)-β-Conhydrine, and (S)-(−)Ropivacaine and Formal Synthesis of (−)-Lasubine II and (+)-Cermizine C. J. Am. Chem. Soc 2010, 132, 12216. - PMC - PubMed
    5. Hodgson DM; Kloesges J Lithiation–Electrophilic Substitution of NThiopivaloylazetidine. Angew. Chem. Int. Ed 2010, 49, 2900. - PubMed
    6. Seel S; Thaler T; Takatsu K; Zhang C; Zipse H; Straub BF; Mayer P; Knochel P Highly Diastereoselective Arylations of Substituted Piperidines. J. Am. Chem. Soc 2011, 133, 4774. - PubMed
    7. Cordier CJ; Lundgren RJ; Fu GC Enantioconvergent Cross-Couplings of Racemic Alkylmetal Reagents with Unactivated Secondary Alkyl Electrophiles: Catalytic Asymmetric Negishi α-Alkylations of N-Boc-pyrrolidine. J. Am. Chem. Soc 2013, 135, 10946. - PMC - PubMed
    8. Liniger M; Estermann K; Altmann K-H Total Synthesis of Hygrolines and Pseudohygrolines. J. Org. Chem 2013, 78, 11066. - PubMed
    9. Firth JD; O’Brien P; Ferris L Synthesis of Enantiopure Piperazines via Asymmetric Lithiation–Trapping of N-Boc Piperazines: Unexpected Role of the Electrophile and Distal N-Substituent. J. Am. Chem. Soc 2016, 138, 651. - PubMed
    10. Lin W; Zhang K-F; Baudoin O Regiodivergent enantioselective C–H functionalization of Boc-1,3-oxazinanes for the synthesis of β2-and β3amino acids. Nat. Catal 2019, 2, 882. - PMC - PubMed

Publication types