First sequence of influenza D virus identified in poultry farm bioaerosols in Sarawak, Malaysia

doi:10.1186/s40794-020-0105-9

. 2020 Mar 12:6:5.

doi: 10.1186/s40794-020-0105-9. eCollection 2020.

First sequence of influenza D virus identified in poultry farm bioaerosols in Sarawak, Malaysia

Emily S Bailey^{1

2

3}, Jane K Fieldhouse^{1

2}, Natalie A Alarja^{1

2}, David D Chen², Maria E Kovalik², Juliana N Zemke², Jessica Y Choi², Laura K Borkenhagen^{1

2}, Teck-Hock Toh^{4

5}, Jeffrey Soon Yit Lee⁴, Kuek-Sen Chong^{5

6}, Gregory C Gray^{1

2

7

8}

Affiliations

¹ 1Division of Infectious Diseases, Duke University School of Medicine, DUMC Box 102359, Durham, NC 27710 USA.
² 2Duke Global Health Institute, Duke University, Durham, North Carolina USA.
³ 3Julia Jones Matthews Department of Public Health, Texas Tech University Health Sciences Center, Abilene, TX USA.
⁴ 4Clinical Research Center, Sibu Hospital, Sibu, Sarawak Malaysia.
⁵ 5Faculty of Medicine, SEGi University, Kota Damansara, Selangor Malaysia.
⁶ Divisional Health Office, Sibu, Sarawak Malaysia.
⁷ 7Global Health Research Center, Duke-Kunshan University, Kunshan, China.
⁸ 8Emerging Infectious Disease Program, Duke-NUS Medical School, Singapore, Singapore.

PMID: 32190346
PMCID: PMC7069008
DOI: 10.1186/s40794-020-0105-9

First sequence of influenza D virus identified in poultry farm bioaerosols in Sarawak, Malaysia

Emily S Bailey et al. Trop Dis Travel Med Vaccines. 2020.

. 2020 Mar 12:6:5.

doi: 10.1186/s40794-020-0105-9. eCollection 2020.

Authors

Affiliations

¹ 1Division of Infectious Diseases, Duke University School of Medicine, DUMC Box 102359, Durham, NC 27710 USA.
² 2Duke Global Health Institute, Duke University, Durham, North Carolina USA.
³ 3Julia Jones Matthews Department of Public Health, Texas Tech University Health Sciences Center, Abilene, TX USA.
⁴ 4Clinical Research Center, Sibu Hospital, Sibu, Sarawak Malaysia.
⁵ 5Faculty of Medicine, SEGi University, Kota Damansara, Selangor Malaysia.
⁶ Divisional Health Office, Sibu, Sarawak Malaysia.
⁷ 7Global Health Research Center, Duke-Kunshan University, Kunshan, China.
⁸ 8Emerging Infectious Disease Program, Duke-NUS Medical School, Singapore, Singapore.

PMID: 32190346
PMCID: PMC7069008
DOI: 10.1186/s40794-020-0105-9

Abstract

In 2018, our team collected aerosols samples from five poultry farms in Malaysia. Influenza D virus was detected in 14% of samples. One sample had an 86.3% identity score similar to NCBI accession number MH785020.1. This is the first molecular sequence of influenza D virus detected in Southeast Asia from a bioaerosol sample. Our findings indicate that further study of role of IDV in poultry is necessary.

Keywords: Aerosol; Bioaerosol; Influenza; Influenza D virus; Poultry.

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Conflict of interest statement

Competing interestsThe research investigators had complete freedom to conduct this research and report results. There were no other potential conflicts of interest to disclose.

Figures

**Fig. 1**
Phylogenetic analysis of 5 North American influenza D virus strains available in NCBI (accession numbers: Mexico Strain: KU710433, KU710432, KU710431, KU710430, Minnesota Strain: KF425671, KF425657, Pennsylvania Strain: MH785020, Kentucky Strain: MK054183, and Oklahoma Strain: KF425664) compared to our bioaerosol sample. The scale indicates the relative genetic distances between each isolated sequence

See this image and copyright information in PMC

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References

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[1] Hause BM, et al. Isolation of a novel swine influenza virus from Oklahoma in 2011 which is distantly related to human influenza C viruses. PLoS Pathog. 2013;9(2):e1003176. doi: 10.1371/journal.ppat.1003176. - DOI - PMC - PubMed

[2] Hause BM, et al. Isolation of a novel swine influenza virus from Oklahoma in 2011 which is distantly related to human influenza C viruses. PLoS Pathog. 2013;9(2):e1003176. doi: 10.1371/journal.ppat.1003176. - DOI - PMC - PubMed

[3] Foni E, Chiapponi C, Baioni L, Zanni I, Merenda M, Rosignoli C, Kyriakis CS, Luini MV, Mandola ML, Bolzoni L, Nigrelli AD, Faccini S. Influenza D in Italy: towards a better understanding of an emerging viral infection in swine. Sci Reports. 2017;7(1):11660. 10.1038/s41598-017-12012-3. - PMC - PubMed

[4] Foni E, Chiapponi C, Baioni L, Zanni I, Merenda M, Rosignoli C, Kyriakis CS, Luini MV, Mandola ML, Bolzoni L, Nigrelli AD, Faccini S. Influenza D in Italy: towards a better understanding of an emerging viral infection in swine. Sci Reports. 2017;7(1):11660. 10.1038/s41598-017-12012-3. - PMC - PubMed

[5] Oliva J, Eichenbaum A, Belin J, Gaudino M, Guillotin J, Alzieu JP, Nicollet P, Brugidou R, Gueneau E, Michel E, Meyer G, Ducatez MF. Serological Evidence of Influenza D Virus Circulation Among Cattle and Small Ruminants in France. Viruses. 2019;11(6):516. 10.3390/v11060516. - PMC - PubMed

[6] Oliva J, Eichenbaum A, Belin J, Gaudino M, Guillotin J, Alzieu JP, Nicollet P, Brugidou R, Gueneau E, Michel E, Meyer G, Ducatez MF. Serological Evidence of Influenza D Virus Circulation Among Cattle and Small Ruminants in France. Viruses. 2019;11(6):516. 10.3390/v11060516. - PMC - PubMed

[7] Quast M, et al. Serological evidence for the presence of influenza D virus in small ruminants. Vet Microbiol. 2015;180(3–4):281–285. doi: 10.1016/j.vetmic.2015.09.005. - DOI - PMC - PubMed

[8] Quast M, et al. Serological evidence for the presence of influenza D virus in small ruminants. Vet Microbiol. 2015;180(3–4):281–285. doi: 10.1016/j.vetmic.2015.09.005. - DOI - PMC - PubMed

[9] O'Donovan T, et al. Seroprevalence of influenza D virus in selected sample groups of Irish cattle, sheep and pigs. Ir Vet J. 2019;72(1). - PMC - PubMed

[10] O'Donovan T, et al. Seroprevalence of influenza D virus in selected sample groups of Irish cattle, sheep and pigs. Ir Vet J. 2019;72(1). - PMC - PubMed

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First sequence of influenza D virus identified in poultry farm bioaerosols in Sarawak, Malaysia

Affiliations

First sequence of influenza D virus identified in poultry farm bioaerosols in Sarawak, Malaysia

Authors

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Abstract

Conflict of interest statement

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