Whole-Genome Sequence of Streptomyces kaniharaensis Shomura and Niida SF-557
- PMID: 32241862
- PMCID: PMC7118188
- DOI: 10.1128/MRA.01434-19
Whole-Genome Sequence of Streptomyces kaniharaensis Shomura and Niida SF-557
Abstract
Streptomyces kaniharaensis is a Gram-positive bacterium that produces formycin A 5'-phosphate, a C nucleotide with antimicrobial and anticancer activity. Here, we report the sequencing, assembly, and annotation of the draft genome sequence of Streptomyces kaniharaensis Shomura and Niida.
Copyright © 2020 Zhu et al.
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References
-
- Suhadolnik RJ. 1970. Nucleoside antibiotics. John Wiley & Sons, New York, NY.
-
- Ochi K, Yashima S, Eguchi Y, Matsushita K. 1979. Biosynthesis of formycin. Incorporation and distribution of 13C-, 14C-, and 15N-labeled compounds into formycin. J Biol Chem 254:8819–8824. - PubMed
-
- Wattam AR, Brettin T, Davis JJ, Gerdes S, Kenyon R, Machi D, Mao C, Olson R, Overbeek R, Pusch GD, Shukla MP, Stevens R, Vonstein V, Warren A, Xia F, Yoo H. 2018. Assembly, annotation, and comparative genomics in PATRIC, the all bacterial bioinformatics resource center. Methods Mol Biol 1704:79–101. doi:10.1007/978-1-4939-7463-4_4. - DOI - PubMed
-
- Wang S-A, Ko Y, Zeng J, Geng Y, Ren D, Ogasawara Y, Irani S, Zhang Y, Liu H-W. 2019. Identification of the formycin A biosynthetic gene cluster from Streptomyces kaniharaensis illustrates the interplay between biological pyrazolopyrimidine formation and de novo purine biosynthesis. J Am Chem Soc 141:6127–6131. doi:10.1021/jacs.9b00241. - DOI - PMC - PubMed
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