Identification of Susceptibility Loci for Spontaneous Coronary Artery Dissection

Abstract

Importance: Spontaneous coronary artery dissection (SCAD), an idiopathic disorder that predominantly affects young to middle-aged women, has emerged as an important cause of acute coronary syndrome, myocardial infarction, and sudden cardiac death.

Objective: To identify common single-nucleotide variants (SNVs) associated with SCAD susceptibility.

Design, setting, and participants: This single-center genome-wide association study examined approximately 5 million genotyped and imputed SNVs and subsequent SNV-targeted replication analysis results in individuals enrolled in the Mayo Clinic SCAD registry from August 30, 2011, to August 2, 2018. Data analysis was performed from June 21, 2017, to December 30, 2019.

Main outcomes and measures: Genetic loci and positional candidate genes associated with SCAD.

Results: This study included 484 white women with SCAD (mean [SD] age, 46.6 [9.2] years) and 1477 white female controls in the discovery cohort (mean [SD] age, 64.0 [14.5] years) and 183 white women with SCAD (mean [SD] age, 47.1 [9.9] years) and 340 white female controls in the replication cohort (mean [SD] age, 51.0 [15.3] years). Associations with SCAD risk reached genome-wide significance at 3 loci (1q21.3 [OR, 1.78; 95% CI, 1.51-2.09; P = 2.63 × 10-12], 6p24.1 [OR, 1.77; 95% CI, 1.51-2.09; P = 7.09 × 10-12], and 12q13.3 [OR, 1.67; 95% CI, 1.42-1.97; P = 3.62 × 10-10]), and 7 loci had evidence suggestive of an association (1q24.2 [OR, 2.10; 95% CI, 1.58-2.79; P = 2.88 × 10-7], 3q22.3 [OR, 1.47; 95% CI, 1.26-1.71; P = 6.65 × 10-7], 4q34.3 [OR, 1.84; 95% CI, 1.44-2.35; P = 9.80 × 10-7], 8q24.3 [OR, 2.57; 95% CI, 1.76-3.75; P = 9.65 × 10-7], 15q21.1 [OR, 1.75; 95% CI, 1.40-2.18; P = 7.23 × 10-7], 16q24.1 [OR, 1.91; 95% CI, 1.49-2.44; P = 2.56 × 10-7], and 21q22.11 [OR, 2.11; 95% CI, 1.59-2.82; P = 3.12 × 10-7]) after adjusting for the top 5 principal components. Associations were validated for 5 of the 10 risk alleles in the replication cohort. In a meta-analysis of the discovery and replication cohorts, associations for the 5 SNVs were significant, with relatively large effect sizes (1q21.3 [OR, 1.77; 95% CI, 1.54-2.03; P = 3.26 × 10-16], 6p24.1 [OR, 1.71; 95% CI, 1.49-1.97; P = 4.59 × 10-14], 12q13.3 [OR, 1.69; 95% CI, 1.47-1.94; P = 1.42 × 10-13], 15q21.1 [OR, 1.79; 95% CI, 1.48-2.17; P = 2.12 × 10-9], and 21q22.11 [OR, 2.18; 95% CI, 1.70-2.81; P = 1.09 × 10-9]). Each index SNV was within or near a gene highly expressed in arterial tissue and previously linked to SCAD (PHACTR1) and/or other vascular disorders (LRP1, LINC00310, and FBN1).

Conclusions and relevance: This study revealed 5 replicated risk loci and positional candidate genes for SCAD, most of which are associated with extracoronary arteriopathies. Moreover, the alternate alleles of 3 SNVs have been previously associated with atherosclerotic coronary artery disease, further implicating allelic susceptibility to coronary artery atherosclerosis vs dissection.

Figure 1.. Manhattan Plot of the Discovery Genome-Wide Association Analysis

The x-axis designates chromosomal position (23 designates the X chromosome), and the y-axis designates the P value derived by logistic regression on a –log₁₀ scale. The horizontal orange and blue lines indicate the threshold for genome-wide significance (P < 5 × 10⁻⁸) and suggestive associations (P < 1 × 10⁻⁰⁶), respectively. Identification numbers indicate index SNPs included in the independent replication study, with red font designating those that replicated.

Figure 2.. Regional LocusZoom Plots Demonstrating Positional Candidate Genes

LocusZoom plots for rs4970935 at 1q21.3 (A), rs9349379 at 6p24.1 (B), rs11172113 at 12q13.3 (C), rs2015637 at 15q21.1 (D), and rs28451064 at 21q22 (E). The x-axis indicates chromosomal position and the y-axis the association significance (–log₁₀ [P value]) for the 400 kilobase flanking the index SNP. Linkage disequilibrium estimates (r²) are color-coded. Recombination hotspots are indicated by blue lines.

Figure 3.. Network of Known and Predicted Functional Associations

Talin 1 (red) interacts with 3 of the genome-wide association study candidate gene-encoding proteins (blue) via actin or integrin isoforms (white). STRING analysis was set at a high confidence interaction score (0.7).