Virtual Boot Camp: COVID-19 evolution and structural biology

Stephen K Burley^{1

2

3

4}, Yana Bromberg⁵, Paul Craig⁶, Siobain Duffy⁷, Shuchismita Dutta^{1

2}, Bonnie L Hall⁸, Brian P Hudson^{1

2}, Jennifer Jiang², Sagar D Khare^{2

9}, Julia R Koeppe¹⁰, Joseph H Lubin⁹, Stephen A Mills¹¹, Michael J Pikaart¹², Rebecca Roberts¹³, Vidur Sarma², Jitendra Singh¹⁴, Jay A Tischfield^{15

16}, Lingjun Xie², Christine Zardecki^{1

2}

Affiliations

¹ Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, New Jersey, USA.
² Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, New Jersey, USA.
³ Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California, San Diego, La Jolla, California, USA.
⁴ Rutgers Cancer Institute of New Jersey, Rutgers, The State University of New Jersey, New Brunswick, New Jersey, USA.
⁵ Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, New Jersey, USA.
⁶ School of Chemistry & Materials Science, Rochester Institute of Technology, Rochester, New York, USA.
⁷ Department of Ecology, Evolution and Natural Resources, School of Environmental and Biological Sciences, Rutgers, The State University of New Jersey, New Brunswick, New Jersey, USA.
⁸ Department of Chemistry, Grand View University, Des Moines, Iowa, USA.
⁹ Department of Chemistry & Chemical Biology, Rutgers University, Piscataway, New Jersey, USA.
¹⁰ Chemistry, State University of New York at Oswego, Oswego, New York, USA.
¹¹ Chemistry Department, Xavier University, Cincinnati, Ohio, USA.
¹² Department of Chemistry and Biochemistry, Hope College, Holland, Michigan, USA.
¹³ Biology Department, Ursinus College, Collegeville, Pennsylvania, USA.
¹⁴ CUNY New York City College of Technology, New York, New York, USA.
¹⁵ Department of Genetics, Rutgers University, Piscataway, New Jersey, USA.
¹⁶ Human Genetics Institute of New Jersey, Piscataway, New Jersey, USA.

PMID: 32797732
PMCID: PMC7590104
DOI: 10.1002/bmb.21428

Virtual Boot Camp: COVID-19 evolution and structural biology

Stephen K Burley et al. Biochem Mol Biol Educ. 2020 Sep.

. 2020 Sep;48(5):511-513.

doi: 10.1002/bmb.21428. Epub 2020 Aug 14.

Authors

Affiliations

¹ Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, New Jersey, USA.
² Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, New Jersey, USA.
³ Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California, San Diego, La Jolla, California, USA.
⁴ Rutgers Cancer Institute of New Jersey, Rutgers, The State University of New Jersey, New Brunswick, New Jersey, USA.
⁵ Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, New Jersey, USA.
⁶ School of Chemistry & Materials Science, Rochester Institute of Technology, Rochester, New York, USA.
⁷ Department of Ecology, Evolution and Natural Resources, School of Environmental and Biological Sciences, Rutgers, The State University of New Jersey, New Brunswick, New Jersey, USA.
⁸ Department of Chemistry, Grand View University, Des Moines, Iowa, USA.
⁹ Department of Chemistry & Chemical Biology, Rutgers University, Piscataway, New Jersey, USA.
¹⁰ Chemistry, State University of New York at Oswego, Oswego, New York, USA.
¹¹ Chemistry Department, Xavier University, Cincinnati, Ohio, USA.
¹² Department of Chemistry and Biochemistry, Hope College, Holland, Michigan, USA.
¹³ Biology Department, Ursinus College, Collegeville, Pennsylvania, USA.
¹⁴ CUNY New York City College of Technology, New York, New York, USA.
¹⁵ Department of Genetics, Rutgers University, Piscataway, New Jersey, USA.
¹⁶ Human Genetics Institute of New Jersey, Piscataway, New Jersey, USA.

PMID: 32797732
PMCID: PMC7590104
DOI: 10.1002/bmb.21428

No abstract available

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References

1. Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, et al. The Protein Data Bank. Nucleic Acids Res. 2000;28:235–42. - PMC - PubMed
1. Burley SK, Berman HM, Bhikadiya C, Bi C, Chen L, Di Costanzo L, et al. RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. Nucleic Acids Res. 2019;47:D464–74. - PMC - PubMed
1. Madeira F, Park YM, Lee J, Buso N, Gur T, Madhusoodanan N, et al. The EMBL‐EBI search and sequence analysis tools APIs in 2019. Nucleic Acids Res. 2019;47:W636–41. - PMC - PubMed
1. Sehnal D, Rose A, Koca J, Burley S, Velankar S. Mol*: towards a common library and tools for web molecular graphics. MolVa: Workshop on Molecular Graphics and Visual Analysis of Molecular Data 2018;29–33.
1. Kleffner R, Flatten J, Leaver‐Fay A, Baker D, Siegel JB, Khatib F, et al. Foldit standalone: a video game‐derived protein structure manipulation interface using Rosetta. Bioinformatics. 2017;33:2765–7. - PMC - PubMed

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Virtual Boot Camp: COVID-19 evolution and structural biology

Affiliations

Virtual Boot Camp: COVID-19 evolution and structural biology

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References

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