Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
Review
. 2020 Nov;27(33):41225-41247.
doi: 10.1007/s11356-020-10471-2. Epub 2020 Aug 23.

Role of environmental factors in shaping the soil microbiome

Affiliations
Review

Role of environmental factors in shaping the soil microbiome

Waqar Islam et al. Environ Sci Pollut Res Int. 2020 Nov.

Abstract

The soil microbiome comprises one of the most important and complex components of all terrestrial ecosystems as it harbors millions of microbes including bacteria, fungi, archaea, viruses, and protozoa. Together, these microbes and environmental factors contribute to shaping the soil microbiome, both spatially and temporally. Recent advances in genomic and metagenomic analyses have enabled a more comprehensive elucidation of the soil microbiome. However, most studies have described major modulators such as fungi and bacteria while overlooking other soil microbes. This review encompasses all known microbes that may exist in a particular soil microbiome by describing their occurrence, abundance, diversity, distribution, communication, and functions. Finally, we examined the role of several abiotic factors involved in the shaping of the soil microbiome.

Keywords: Composition; Environmental factors; Interactions; Microbes; Terrestrial ecosystem.

PubMed Disclaimer

References

    1. Adnan M, Zheng W, Islam W et al (2018) Carbon catabolite repression in filamentous Fungi. Int J Mol Sci 19:48. https://doi.org/10.3390/ijms19010048 - DOI
    1. Ahmad F, Husain FM, Ahmad I et al (2011) Rhizosphere and root colonization by bacterial inoculants and their monitoring methods: A critical area in PGPR research. In: Ahmad I, Ahmad F, Pichtel J (ed) Microbes and Microbial Technology: Agricultural and Environmental Applications. Springer Nature, Switzerland, pp 363–391. https://doi.org/10.1007/978-1-4419-7931-5_14
    1. Ali H, Khan E, Sajad MA (2013) Phytoremediation of heavy metals-concepts and applications. Chemosphere 91:869–881 - DOI
    1. Amundson R (2013) Soil formation. In: Holland HD, Turekian KK (eds) Treatise on geochemistry, 2nd edn. Elsevier Science, USA, pp 1–26. https://doi.org/10.1016/B978-0-08-095975-7.00501-5 - DOI
    1. Andika IB, Kondo H, Sun L (2016) Interplays between soil-borne plant viruses and RNA silencing-mediated antiviral defense in roots. Front Microbiol 7. https://doi.org/10.3389/fmicb.2016.01458

LinkOut - more resources