Forensic application and genetic diversity of 21 autosomal STR loci in five major population groups of Pakistan
- PMID: 32979087
- DOI: 10.1007/s00414-020-02393-y
Forensic application and genetic diversity of 21 autosomal STR loci in five major population groups of Pakistan
Abstract
Objectives: Investigation of genetic diversity of the 21 autosomal STR loci included in the GlobalFilerTM PCR Amplification Kit in 529 Pakistani individuals belonging to the Punjabi, Pashtun, Sindhi, Saraiki, and Baloch ethnic groups. Population genetic parameters and forensic informative metrics for each group were evaluated.
Results: SE33 showed the greatest power of discrimination in all populations studied. The combined match probability ranged from 8.06E-27 (Saraiki) to 1.05E-26 (Baloch), and the combined power of exclusion ranged from 0.99999999902 (Punjabi) to 0.99999999964 (Pashtun). D12S391 in the Baloch population and D2S441 in the Saraiki population showed deviation from Hardy-Weinberg equilibrium.
Conclusion: Significant genetic distances were observed between the Punjabi, Pashtun, and Baloch populations. This study supports the utilization of the GlobalFilerTM STR kit for forensic applications in Pakistan.
Keywords: Autosomal STRs; Forensic genetics; GlobalFiler™; Pakistan; Population genetics.
Similar articles
-
Anthropological analyses of 30 insertion/deletion autosomal markers in five major ethnic groups of Pakistan.Forensic Sci Res. 2021 Aug 28;7(2):202-206. doi: 10.1080/20961790.2021.1933366. eCollection 2022. Forensic Sci Res. 2021. PMID: 35784406 Free PMC article.
-
Genetic distribution of 15 autosomal STR markers in the Punjabi population of Pakistan.Int J Legal Med. 2016 Nov;130(6):1487-1488. doi: 10.1007/s00414-016-1351-2. Epub 2016 Mar 17. Int J Legal Med. 2016. PMID: 26987319
-
Genetic polymorphism of 15 autosomal short tandem repeats in Baloch population of Pakistan.Int J Legal Med. 2019 May;133(3):775-776. doi: 10.1007/s00414-018-1878-5. Epub 2018 Jun 20. Int J Legal Med. 2019. PMID: 29923075
-
Forensic features and genetic legacy of the Baloch population of Pakistan and the Hazara population across Durand line revealed by Y-chromosomal STRs.Int J Legal Med. 2021 Sep;135(5):1777-1784. doi: 10.1007/s00414-021-02591-2. Epub 2021 Apr 5. Int J Legal Med. 2021. PMID: 33818632
-
Genetic diversity and forensic application of Y-filer STRs in four major ethnic groups of Pakistan.BMC Genomics. 2022 Nov 30;23(1):788. doi: 10.1186/s12864-022-09028-z. BMC Genomics. 2022. PMID: 36451116 Free PMC article.
Cited by
-
Phenotypic Classification of Eye Colour and Developmental Validation of the Irisplex System on Population Living in Malakand Division, Pakistan.Biomedicines. 2023 Apr 20;11(4):1228. doi: 10.3390/biomedicines11041228. Biomedicines. 2023. PMID: 37189847 Free PMC article.
-
Phylogenetic analysis of the enigmatic Kalash population in Pakistan.Sci Rep. 2025 May 24;15(1):18101. doi: 10.1038/s41598-025-94986-z. Sci Rep. 2025. PMID: 40413307 Free PMC article.
-
Analysis of Skin Pigmentation and Genetic Ancestry in Three Subpopulations from Pakistan: Punjabi, Pashtun, and Baloch.Genes (Basel). 2021 May 13;12(5):733. doi: 10.3390/genes12050733. Genes (Basel). 2021. PMID: 34068188 Free PMC article.
References
-
- Qamar R, Ayub Q, Khaliq S, Mansoor A, Karafet T, Mehdi SQ, Hammer MF (1999) African and Levantine origins of Pakistani YAP+ Y chromosomes. Hum Biol 71:745–755 - PubMed
-
- Hussain R (2005) The effect of religious, cultural and social identity on population genetic structure among Muslims in Pakistan. Ann Hum Biol 32:145–153. https://doi.org/10.1080/03014460500075167 - DOI - PubMed
-
- Mehdi SQ, Qamar R, Ayub Q, Khaliq S, Mansoor A, Ismail M, Hammer MF, Underhill PA, Cavalli-Sforza LL (1999) The origins of Pakistani populations. In: Papiha SS, Deka R, Chakraborty R (eds) Genomic diversity: applications in human population genetics. Springer US, Boston, MA, pp 83–90 - DOI
-
- Giosan L, Clift PD, Macklin MG, Fuller DQ, Constantinescu S, Durcan JA, Stevens T, Duller GAT, Tabrez AR, Gangal K, Adhikari R, Alizai A, Filip F, VanLaningham S, Syvitski JPM (2012) Fluvial landscapes of the Harappan civilization. Proc Natl Acad Sci U S A 109:E1688–E1694. https://doi.org/10.1073/pnas.1112743109 - DOI - PubMed - PMC
-
- Recchia GL, Louwerse MM (2016) Archaeology through computational linguistics: inscription statistics predict excavation sites of Indus Valley artifacts. Cogn Sci 40:2065–2080. https://doi.org/10.1111/cogs.12311 - DOI - PubMed
MeSH terms
Grants and funding
LinkOut - more resources
Full Text Sources