Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2020 Nov 19;9(47):e00945-20.
doi: 10.1128/MRA.00945-20.

Draft Genome Sequence of Psychrotolerant Shewanella sp. Strain VB17, Isolated from Marine Intertidal Sediment near Virginia Beach, Virginia

Julia C Clement  1 , Paul D Kastner  1 , David A Essig  2
Affiliations

Draft Genome Sequence of Psychrotolerant Shewanella sp. Strain VB17, Isolated from Marine Intertidal Sediment near Virginia Beach, Virginia

Julia C Clement et al. Microbiol Resour Announc. .

Abstract

We present the draft genome sequence of Shewanella sp. strain VB17, which was isolated from Virginia Beach, Virginia, intertidal sediment. The 5.2-Mb genome sequence of VB17 will be useful for studying the basis for seasonal low-temperature growth and eventual taxonomic classification of the species.

PubMed Disclaimer

References

    1. Giovannoni SJ, Vergin KL. 2012. Seasonality in ocean microbial communities. Science 335:671–676. doi:10.1126/science.1198078. - DOI - PubMed
    1. Hicks N, Liu X, Gregory R, Kenny J, Lucaci A, Lenzi L, Paterson DM, Duncan KR. 2018. Temperature driven changes in benthic bacterial diversity influences biogeochemical cycling in coastal sediments. Front Microbiol 9:1730–1716. doi:10.3389/fmicb.2018.01730. - DOI - PMC - PubMed
    1. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y, Seo H, Chun J. 2017. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 67:1613–1617. doi:10.1099/ijsem.0.001755. - DOI - PMC - PubMed
    1. Mayjonade B, Gouzy J, Donnadieu C, Pouilly N, Marande W, Callot C, Langlade N, Muños S. 2016. Extraction of high-molecular-weight genomic DNA for long-read sequencing of single molecules. Biotechniques 61:203–205. doi:10.2144/000114460. - DOI - PubMed
    1. Kolmogorov M, Yuan J, Lin Y, Pevzner P. 2019. Assembly of long, error-prone reads using repeat graphs. Nat Biotechnol 37:540–546. doi:10.1038/s41587-019-0072-8. - DOI - PubMed

LinkOut - more resources