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. 2019 Oct 21;4(2):3683-3684.
doi: 10.1080/23802359.2019.1678431.

The complete chloroplast genome of Vitis amurensis Rupr., an economic plant to China

Jun Xie  1 , Xiaojing Guo  1 , Rong Wang  1 , Jing Liu  1 , Yujuan Liu  1 , Gaixia Qiao  1 , Meilong Xu  1
Affiliations

The complete chloroplast genome of Vitis amurensis Rupr., an economic plant to China

Jun Xie et al. Mitochondrial DNA B Resour. .

Abstract

The chloroplast (cp) genome sequence of Vitis amurensis has been characterized from Illumina pair-end sequencing. The complete cp genome was 161,014 bp in length, containing a large single-copy region (LSC) of 89,239 bp and a small single-copy region (SSC) of 19,067 bp, which were separated by a pair of 26,354 bp inverted repeat regions (IRs). The genome contained 133 genes, including 88 protein coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content is 37.4%, while the corresponding values of the LSC, SSC, and IR regions are 35.3%, 31.7%, and 43.0%, respectively. Further, phylogenetic analysis suggested that the V. amurensis was sister to Vitis coignetiae.

Keywords: Illumina sequencing; Vitis amurensis; chloroplast genome; phylogenetic analysis.

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Conflict of interest statement

The authors report no conflicts of interest. The authors alone are responsible for the content and writing of this article.

Figures

Figure 1.
Figure 1.
Maximum-likelihood (ML) tree of V. amurensis and its related relatives based on the complete chloroplast genome sequences.
See this image and copyright information in PMC

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References

    1. Chen XQ, Cui HB, Dai LK. 1987. Flora of China. Vol. 48 Beijing, China: Science Press.
    1. Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45:e18. - PMC - PubMed
    1. Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
    1. Huang DI, Cronk Q. 2015. Plann: a command-line application for annotating plastome sequences. Appl Plant Sci. 3:1500026. - PMC - PubMed
    1. Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780. - PMC - PubMed

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