Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2019 Dec 5;4(2):3969-3970.
doi: 10.1080/23802359.2019.1689193.

Characterization of the complete chloroplast genome of Ajuga forrestii (Lamiaceae), a medicinal plant in southwest of China

Ai-En Tao  1   2 , Fei-Ya Zhao  1   2 , Cong-Long Xia  1   3
Affiliations

Characterization of the complete chloroplast genome of Ajuga forrestii (Lamiaceae), a medicinal plant in southwest of China

Ai-En Tao et al. Mitochondrial DNA B Resour. .

Abstract

Ajuga forrestii is a medicinal plant commonly used in southwest of China. In this study, we sequenced the complete chloroplast (cp) genome sequence of A. forrestii to investigate its phylogenetic relationship in the family Lamiaceae. The chloroplast genome of A. forrestii was 150,492 bp in length with 38.3% overall GC content, including a large single copy (LSC) region of 82,148 bp, a small single copy (SSC) region of 17,160 bp and a pair of inverted repeats (IRs) of 25,592 bp. The cp genome contained 112 genes, including 79 protein coding genes, 29 tRNA genes, and 4 rRNA genes. The phylogenetic analysis indicated Ajuga was closely related to Scutellaria.

Keywords: Ajuga forrestii; Illumina sequencing; chloroplast; phylogeny.

PubMed Disclaimer

Conflict of interest statement

The authors are highly grateful to the published genome data in the public database. The authors declare no conflicts of interest and are responsible for the content.

Figures

Figure 1.
Figure 1.
Neighbor-joining (NJ) tree of 25 species within the family Lamiaceae based on the plastomes using four Solanaceae species as outgroups.
See this image and copyright information in PMC

Similar articles

See all similar articles

Cited by

See all "Cited by" articles

References

    1. Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120. - PMC - PubMed
    1. Chen T, Diao QY, Yu HZ, Jiao CL, Ruan J. 2018. Phytochemical, cytotoxic and chemotaxonomic study on Ajuga forrestii Diels (Labiatae). Nat Prod Res. 32(8):977–981. - PubMed
    1. Cocquyt K, Cos P, Herdewijn P, Maes L, Van den Steen PE, Laekeman G. 2011. Ajuga remota Benth: from ethnopharmacology to phytomedical perspective in the treatment of malaria. Phytomedicine. 18(14):1229–1237. - PubMed
    1. Doyle J, 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 1:11–15.
    1. Greiner S, Lehwark P, Bock R. 2019. OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Res. 47(W1):W59–W64. - PMC - PubMed

LinkOut - more resources