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. 2019 Nov 20;4(2):4132-4133.
doi: 10.1080/23802359.2019.1692727.

The complete chloroplast genome sequence of Habenaria ciliolaris (Orchidaceae)

Ming-Kun Chen  1 , Juan Chen  1 , Jie Zhou  1 , Shan-Hu Ma  1 , Qing-Dong Zheng  1 , Tai-Xiang Xie  1 , Ye Ai  1
Affiliations

The complete chloroplast genome sequence of Habenaria ciliolaris (Orchidaceae)

Ming-Kun Chen et al. Mitochondrial DNA B Resour. .

Abstract

Habenaria ciliolaris is a kind of orchid with ornamental value. In this study, we reported the complete chloroplast genome of H. ciliolaris. The complete chloroplast genome is 154,544 bp in length, consists of a pair of inverted repeat (IR, 25,455 bp) regions, a large single-copy region (LSC, 84,032 bp) and a small single-copy region (SSC, 19,602 bp). It contains 179 genes, including 133 protein-coding genes, 38 tRNAs, and 8 rRNAs. A maximum-likelihood phylogenetic analysis demonstrated a close relationship between H. ciliolaris and Habenaria radiata. This work will be valuable for genetic and phylogenetic studies on H. ciliolaris.

Keywords: Chloroplast genome; Habenaria ciliolaris; Illumina sequencing; phylogenetic.

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Conflict of interest statement

There are no conflicts of interest for all the authors including the implementation of research experiments and writing this article.

Figures

Figure 1.
Figure 1.
Maximum-likelihood phylogenetic tree of H. ciliolaris with 10 complete chloroplast genome sequences of Orchidaceae. Numbers in the nodes are the bootstrap values from 1000 replicates and the position of H. ciliolaris is shown in bold. All the sequences were downloaded from NCBI GenBank.
See this image and copyright information in PMC

References

    1. Chen SC, Liu ZJ, Zhu GH, Lang KY, Tsi ZH, Luo YB, Jin XH, Cribb PJ, Wood JJ, Gale SW, et al. . 2009. Flora of China. Vol. 25 Beijing (China): Science Press.
    1. Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
    1. Govaerts R, Bemet P, Kratochvil K, Gerlach G, Carr G, Alrich P, Pridgeon AM, Pfahl J, Campacci MA, Baptista DH, et al. . 2013. World checklist of Orchidaceae. London (UK): Botanic Gardens, Kew; [accessed 2013 Mar 14]. http://apps.kew.org/wcsp/.
    1. Li Y, Li Z, Hu Q, Zhai J, Liu Z, Wu S. 2019. Complete plastid genome of Apostasia shenzhenica (Orchidaceae). Mitochondr DNA B. 4(1):1388–1389.
    1. Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, He G, Chen Y, Pan Q, Liu Y, et al. . 2012. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience. 1(1):18. - PMC - PubMed

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