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. 2020 Jan 14;5(1):562-563.
doi: 10.1080/23802359.2019.1710289.

The complete chloroplast genome of Vitis heyneana Roem. et Schult., an economic plant to China

Binbin Qin  1 , Yujuan Liu  1 , ZeYun Huang  2 , Jing Liu  1 , Qinpei Chen  2 , Guolun Jia  1 , Jun Xie  1
Affiliations

The complete chloroplast genome of Vitis heyneana Roem. et Schult., an economic plant to China

Binbin Qin et al. Mitochondrial DNA B Resour. .

Abstract

The chloroplast (cp) genome sequence of Vitis heyneana has been characterized from Illumina pair-end sequencing. The complete cp genome was 160,830 bp in length, containing a large single-copy region (LSC) of 89,049 bp and a small single-copy region (SSC) of 19,071 bp, which were separated by a pair of 26,355 bp inverted repeat regions (IRs). The genome contained 131 genes, including 88 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content is 37.4%, while the corresponding values of the LSC, SSC, and IR regions are 35.3, 31.7, and 43.0%, respectively. Further, the phylogenetic analysis suggested that V. heyneana was closely related to Vitis ficifolia.

Keywords: Chloroplast genome; Illumina sequencing; Vitis heyneana; phylogenetic analysis.

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Conflict of interest statement

The authors report no conflicts of interest. The authors alone are responsible for the content and writing of this article.

Figures

Figure 1.
Figure 1.
The BI phylogenetic tree of V. heyneana based on the concatenated nucleotide sequences of 18 PCGs. Bayesian posterior probabilities values are given above the branches.
See this image and copyright information in PMC

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