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. 2020 May 27;5(3):2193-2194.
doi: 10.1080/23802359.2020.1768961. eCollection 2020.

The complete chloroplast genome sequence of Litsea cubeba

Qinghua Wang  1 , Huangyijun Wang  2 , Yunqin Li  1 , Xiaolong Yuan  1 , Ting Luo  1 , Yi Wang  1
Affiliations

The complete chloroplast genome sequence of Litsea cubeba

Qinghua Wang et al. Mitochondrial DNA B Resour. .

Abstract

The first complete chloroplast genome (cpDNA) sequence of Litsea cubeba was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 152,725 bp in length, contains a large single-copy region (LSC) of 93,673 bp, and a small single-copy region (SSC) of 18,924 bp, which were separated by a pair of inverted repeats (IR) regions of 20,064 bp, each. The genome contains 126 genes, including 82 protein-coding genes, 8 ribosomal RNA genes, and 36 transfer RNA genes. The further phylogenomic analysis showed that L. cubeba and Litsea garrettii clustered in a clade in Lauraceae family.

Keywords: Illumina sequencing; Litsea cubeba; chloroplast; phylogenetic analysis.

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Conflict of interest statement

No potential conflict of interest was reported by the author(s).

Figures

Figure 1.
Figure 1.
The maximum-likelihood tree based on the fourteen chloroplast genomes of Lauraceae family. The bootstrap value based on 1000 replicates is shown on each node.
See this image and copyright information in PMC

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