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. 2020 Jun 1;5(3):2252-2253.
doi: 10.1080/23802359.2020.1772136. eCollection 2020.

The whole genome assembly and evolution analyze of carmine radish (Raphanus sativus L.) Mitochondrion

Hua Peng  1 , Jian Gao  2   3
Affiliations

The whole genome assembly and evolution analyze of carmine radish (Raphanus sativus L.) Mitochondrion

Hua Peng et al. Mitochondrial DNA B Resour. .

Abstract

Carmine radish, which contained a high natural red pigment (red radish pigment), was peculiar produced in Fuling, Chongqing City. Here, the complete nucleotide sequences of the mitochondrial (mt) genome of carmine radish (Raphanus sativus L.) have been determined with a circular sequence with the lengths of 258,965 bp, comprised of 40 protein-coding genes, 23 tRNA genes, and three ribosomal RNA genes. To demonstrate the evolution of organelles genomes in plants, other plant mitochondrial genomes' evolution were also selected for analyze. The results showed that carmine radish (Raphanus sativus L.) is related to MS_Gensuke (Raphanus sativus L.) and Black radish (Raphanus sativus L.), as well as related to Brassica nigra and Brassica carinata, comparing with other Brassicaceae species. This study will provide important genetic tools for other Brassicaceae species research and improve yields of economically important plants.

Keywords: Carmine radish; Mitochondrion genome; phylogenetic analysis.

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Conflict of interest statement

The authors report no conflicts of interest. The authors alone are responsible for the content and writing of the paper. The data that support the findings of this study are openly available in GenBank with the accession number of MT106662.1 (https://www.ncbi.nlm.nih.gov/nuccore/MT106662.1/).

Figures

Figure 1.
Figure 1.
The Neighbor-Joining phylogenetic tree of 21 plant mt genomes based on conserved mitochondrial genes. Bootstrap values are listed for each node.
See this image and copyright information in PMC

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