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. 2020 Jun 1;5(3):2254-2255.
doi: 10.1080/23802359.2020.1772138. eCollection 2020.

Complete mitochondrial DNA of the marine water flea Diaphanosoma celebensis (Cladocera, Sididae)

Beom-Soon Choi  1 , Young Hwan Lee  2 , Hee-Jin Kim  3 , Atsushi Hagiwara  3   4 , Jae-Seong Lee  1
Affiliations

Complete mitochondrial DNA of the marine water flea Diaphanosoma celebensis (Cladocera, Sididae)

Beom-Soon Choi et al. Mitochondrial DNA B Resour. .

Abstract

The complete mitochondrial genome was sequenced from the marine water flea Diaphanosoma celebensis. The sequenced mitochondrial genome size was 17,060 bp, possessing identical gene order of 13 protein-coding genes (PGCs) to those of the congeneric freshwater species Diaphanosoma dubium in the genus Diaphanosoma. The mitochondrial genome of D. celebensis had 13 PGCs, two rRNAs, and 22 tRNAs. Of 13 PGCs, three genes (CO3, ND3, and ND4) had incomplete stop codons. Furthermore, the stop codons of the remaining ten PGCs were TAA (for CO1, ATP8, ATP6, ND5, ND6, and ND1) and TAG (for NL4L, Cytb, and ND2). The second and third base composition of codon on 9 PCGs on the L strand in D. celebensis mitogenome showed an anti-G bias (11.0% and 15.0%), respectively.

Keywords: Diaphanosoma celebensis; complete mitochondrial DNA.

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Conflict of interest statement

The authors report no conflicts of interest. The authors alone are responsible for the content and writing of the paper.

Figures

Figure 1.
Figure 1.
Phylogenetic analysis. We conducted a comparison of the mitochondrial cytochrome oxidase 1 (CO1) gene of six species in the genus Diaphanosoma. The mitochondrial CO1 gene was aligned by ClustalW. Maximum-likelihood analysis was performed by Mega software (ver. 10.0.1) with LG + G + I model. The rapid bootstrap analysis was conducted with 1000 replications with 48 threads running in parallel. The cladoceran Daphnia magna served as an outgroup. Ln = −2021.49.
See this image and copyright information in PMC

References

    1. In S, Yoon HW, Yoo JW, Cho H, Kim R-O, Lee Y-M.. 2019. Acute toxicity of bisphenol A and its structural analogues and transcriptional modulation of the ecdysone-mediated pathway in the brackish water flea Diaphanosoma celebensis. Ecotoxicol Environ Saf. 179:310–317. - PubMed
    1. Kim B-M, Kang S, Kim R-O, Jung J-H, Lee K-W, Rhee J-S, Lee Y-M.. 2018. De novo transcriptome assembly of brackish water flea Diaphanosoma celebensis based on short-term cadmium and benzo[a]pyrene exposure experiments. Hereditas. 155:36. - PMC - PubMed
    1. Korovchinsky NM. 1989. Redescription of Diaphanosoma celebensis Stingelin, 1900 (Crustacea, Cladocera). Hydrobiologia. 184(1–2):7–22.
    1. Korovchinsky NM. 1993. New records of Diaphanosoma celebensis Stingelin 1900 (Crustacea: Daphniiformes: Sididae) in tropical Asia with remarks on the morphological variability and biology of the species. Rev Hydrobiol Trop. 26:119–125.
    1. Liu P, Xu S, Huang Q, Dumont HJ, Lin Q, Han B-P.. 2017. The mitochondrial genome of Diaphanosoma dubium with comparison with Daphnia magna. Mitochondrial DNA B. 2(2):926–927. - PMC - PubMed

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