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. 2021 Jan 7;10(1):e01267-20.
doi: 10.1128/MRA.01267-20.

Genomic Sequences and Analysis of Five SARS-CoV-2 Variants Obtained from Patients in Lambayeque, Peru

Affiliations

Genomic Sequences and Analysis of Five SARS-CoV-2 Variants Obtained from Patients in Lambayeque, Peru

Franklin Rómulo Aguilar-Gamboa et al. Microbiol Resour Announc. .

Abstract

Here, we report the genomic sequences of five severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strains obtained from nasopharyngeal samples from five tested coronavirus disease 2019 (COVID-19)-infected patients from the Lambayeque region in Peru during early April 2020.

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References

    1. Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114–2120. doi:10.1093/bioinformatics/btu170. - DOI - PMC - PubMed
    1. Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup . 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25:2078–2079. doi:10.1093/bioinformatics/btp352. - DOI - PMC - PubMed
    1. Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, MacManes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R, William T, Dewey CN, Henschel R, LeDuc RD, Friedman N, Regev A. 2013. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc 8:1494–1512. doi:10.1038/nprot.2013.084. - DOI - PMC - PubMed
    1. Otto TD, Dillon GP, Degrave WS, Berriman M. 2011. RATT: rapid annotation transfer tool. Nucleic Acids Res 39:e57. doi:10.1093/nar/gkq1268. - DOI - PMC - PubMed
    1. Rice P, Longden I, Bleasby A. 2000. EMBOSS: the European Molecular Biology Open software suite. Trends Genet 16:276–277. doi:10.1016/s0168-9525(00)02024-2. - DOI - PubMed

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